RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 GDF11O95390 407 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 TTLL1O95922 423 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 GOLGA8HP0CJ92 632 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 PKN1Q16512 942 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 TMEM87AQ8NBN3 555 aa24.65■■□□□ 1.54
CLN3-209ENST00000561689 KIF28PB7ZC32 967 aa24.64■■□□□ 1.54
CLN3-209ENST00000561689 GADD45BO75293 160 aaPredicted RBP24.64■■□□□ 1.54
CLN3-209ENST00000561689 ATP2B2Q01814 1243 aa24.64■■□□□ 1.54
CLN3-209ENST00000561689 KIF23Q02241 960 aaPredicted RBP24.64■■□□□ 1.54
CLN3-209ENST00000561689 FAM83AQ86UY5 434 aa24.64■■□□□ 1.54
CLN3-209ENST00000561689 GPT2Q8TD30 523 aa24.64■■□□□ 1.54
CLN3-209ENST00000561689 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.64■■□□□ 1.54
CLN3-209ENST00000561689 TPRNQ4KMQ1 711 aa24.63■■□□□ 1.53
CLN3-209ENST00000561689 USP17L2Q6R6M4 530 aa24.63■■□□□ 1.53
CLN3-209ENST00000561689 RGS22Q8NE09 1264 aa24.63■■□□□ 1.53
CLN3-209ENST00000561689 KCNJ14Q9UNX9 436 aa24.63■■□□□ 1.53
CLN3-209ENST00000561689 ASTN2O75129 1339 aaPredicted RBP24.63■■□□□ 1.53
CLN3-209ENST00000561689 PALM3A6NDB9 673 aaPredicted RBP24.63■■□□□ 1.53
CLN3-209ENST00000561689 USP17L5A8MUK1 530 aa24.62■■□□□ 1.53
CLN3-209ENST00000561689 RRP1BQ14684 758 aaKnown RBP24.62■■□□□ 1.53
CLN3-209ENST00000561689 KLHL40Q2TBA0 621 aa24.62■■□□□ 1.53
CLN3-209ENST00000561689 HERC5Q9UII4 1024 aaKnown RBP24.62■■□□□ 1.53
CLN3-209ENST00000561689 PARP1P09874 1014 aaKnown RBP24.62■■□□□ 1.53
CLN3-209ENST00000561689 GNAQP50148 359 aa24.62■■□□□ 1.53
CLN3-209ENST00000561689 JAG1P78504 1218 aa24.62■■□□□ 1.53
CLN3-209ENST00000561689 GSE1Q14687 1217 aa24.62■■□□□ 1.53
CLN3-209ENST00000561689 ABCB5Q2M3G0 1257 aa24.62■■□□□ 1.53
CLN3-209ENST00000561689 CEBPZQ03701 1054 aaKnown RBP24.61■■□□□ 1.53
CLN3-209ENST00000561689 RASA3Q14644 834 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 SEPT2Q15019 361 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 SLC35G1Q2M3R5 365 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 KIF4BQ2VIQ3 1234 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 GPC2Q8N158 579 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 SHISA4Q96DD7 197 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 FTOQ9C0B1 505 aaKnown RBP eCLIP24.61■■□□□ 1.53
CLN3-209ENST00000561689 VPS54Q9P1Q0 977 aa24.61■■□□□ 1.53
CLN3-209ENST00000561689 KLRF2D3W0D1 207 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 H7C1D1 291 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 CSPP1Q1MSJ5 1256 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 MIGA2Q7L4E1 593 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 SCAND2PQ9GZW5 306 aaPredicted RBP24.6■■□□□ 1.53
CLN3-209ENST00000561689 CPVLQ9H3G5 476 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 KANSL2Q9H9L4 492 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 RNF181Q9P0P0 153 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 TCHHQ07283 1943 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 GH2P01242 217 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 MMP1P03956 469 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 PDHBP11177 359 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 EEF2P13639 858 aaKnown RBP24.6■■□□□ 1.53
CLN3-209ENST00000561689 GNL2Q13823 731 aaKnown RBP24.6■■□□□ 1.53
CLN3-209ENST00000561689 TMEM179Q6ZVK1 233 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 SPATA32Q96LK8 384 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 PGAP2Q9UHJ9 254 aa24.6■■□□□ 1.53
CLN3-209ENST00000561689 MYH8P13535 1937 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 CYTH3O43739 400 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 VEGFAP15692 232 aaPredicted RBP24.59■■□□□ 1.53
CLN3-209ENST00000561689 TNNI2P48788 182 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 BRAPQ7Z569 592 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 GPRC5DQ9NZD1 345 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 HACL1Q9UJ83 578 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 CFAP45Q9UL16 551 aa24.59■■□□□ 1.53
CLN3-209ENST00000561689 FRMPD2Q68DX3 1309 aaPredicted RBP24.59■■□□□ 1.53
CLN3-209ENST00000561689 LEO1Q8WVC0 666 aaPredicted RBP24.58■■□□□ 1.53
CLN3-209ENST00000561689 USP28Q96RU2 1077 aa24.58■■□□□ 1.53
CLN3-209ENST00000561689 SAFBQ15424 915 aaKnown RBP eCLIP24.58■■□□□ 1.52
CLN3-209ENST00000561689 SIAH1Q8IUQ4 282 aa24.58■■□□□ 1.52
CLN3-209ENST00000561689 DIS3L2Q8IYB7 885 aaKnown RBP24.58■■□□□ 1.52
CLN3-209ENST00000561689 ZNF396Q96N95 335 aaPredicted RBP24.58■■□□□ 1.52
CLN3-209ENST00000561689 BTBD18B2RXH4 712 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 SCG2P13521 617 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 XBP1P17861 261 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 ICA1Q05084 483 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 TNFAIP1Q13829 316 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 PFKFB3Q16875 520 aaPredicted RBP24.57■■□□□ 1.52
CLN3-209ENST00000561689 PPP4R3BQ5MIZ7 849 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 LZTS2Q9BRK4 669 aa24.57■■□□□ 1.52
CLN3-209ENST00000561689 U2AF2P26368 475 aaKnown RBP eCLIP24.56■■□□□ 1.52
CLN3-209ENST00000561689 UBE2HP62256 183 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 MYSM1Q5VVJ2 828 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 TRPM4Q8TD43 1214 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 CABP5Q9NP86 173 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 NYAP2Q9P242 653 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 DDNO94850 711 aaPredicted RBP24.56■■□□□ 1.52
CLN3-209ENST00000561689 MBD3O95983 291 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 SNHG28P0DPA3 235 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 EPS15P42566 896 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 CAVIN1Q6NZI2 390 aaKnown RBP24.56■■□□□ 1.52
CLN3-209ENST00000561689 UBA5Q9GZZ9 404 aa24.56■■□□□ 1.52
CLN3-209ENST00000561689 BAZ2BQ9UIF8 2168 aaKnown RBP24.55■■□□□ 1.52
CLN3-209ENST00000561689 RAD21O60216 631 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 TBC1D12O60347 775 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 C9orf131Q5VYM1 1079 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 OXER1Q8TDS5 423 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 MKL1Q969V6 931 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 TEPSINQ96N21 525 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 PHF20Q9BVI0 1012 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 GPCPD1Q9NPB8 672 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 RBM27Q9P2N5 1060 aaKnown RBP24.55■■□□□ 1.52
CLN3-209ENST00000561689 ELP1O95163 1332 aa24.55■■□□□ 1.52
CLN3-209ENST00000561689 GREB1LQ9C091 1923 aaPredicted RBP24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms