RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SKAP1Q86WV1 359 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 KIF1BPQ96EK5 621 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 EDC3Q96F86 508 aaKnown RBP16.84■□□□□ 0.29
LDLR-213ENST00000560502 FLRT1Q9NZU1 646 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 GLRX3O76003 335 aaKnown RBP16.83■□□□□ 0.28
LDLR-213ENST00000560502 PDE6AP16499 860 aa16.83■□□□□ 0.28
LDLR-213ENST00000560502 EVX2Q03828 476 aa16.83■□□□□ 0.28
LDLR-213ENST00000560502 LRRC26Q2I0M4 334 aa16.83■□□□□ 0.28
LDLR-213ENST00000560502 BMP2KLQ5H9B9 411 aa16.83■□□□□ 0.28
LDLR-213ENST00000560502 CUL9Q8IWT3 2517 aa16.83■□□□□ 0.28
LDLR-213ENST00000560502 RPAP3Q9H6T3 665 aaPredicted RBP16.83■□□□□ 0.28
LDLR-213ENST00000560502 CABP5Q9NP86 173 aa16.83■□□□□ 0.28
LDLR-213ENST00000560502 MYH7P12883 1935 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 BAZ2AQ9UIF9 1905 aaKnown RBP16.82■□□□□ 0.28
LDLR-213ENST00000560502 MAGEB6P1A0A0J9YX57 407 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 EIF5BO60841 1220 aaKnown RBP16.82■□□□□ 0.28
LDLR-213ENST00000560502 SEPT2Q15019 361 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 TTF1Q15361 905 aaPredicted RBP16.82■□□□□ 0.28
LDLR-213ENST00000560502 TDHQ8IZJ6 230 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 RHPN1Q8TCX5 695 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 CWC22Q9HCG8 908 aaKnown RBP16.82■□□□□ 0.28
LDLR-213ENST00000560502 IL1RAPL2Q9NP60 686 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 LTBP2Q14767 1821 aa16.82■□□□□ 0.28
LDLR-213ENST00000560502 A0A1W2PRG0 241 aa16.81■□□□□ 0.28
LDLR-213ENST00000560502 TCRBV5S4A2TA0A5A2 114 aa16.81■□□□□ 0.28
LDLR-213ENST00000560502 MFSD14CQ5VZR4 134 aa16.81■□□□□ 0.28
LDLR-213ENST00000560502 NPLOC4Q8TAT6 608 aa16.81■□□□□ 0.28
LDLR-213ENST00000560502 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.81■□□□□ 0.28
LDLR-213ENST00000560502 CRNKL1Q9BZJ0 848 aaKnown RBP16.81■□□□□ 0.28
LDLR-213ENST00000560502 OSBPL3Q9H4L5 887 aa16.81■□□□□ 0.28
LDLR-213ENST00000560502 DDX20Q9UHI6 824 aaKnown RBP16.81■□□□□ 0.28
LDLR-213ENST00000560502 ZNF532Q9HCE3 1301 aa16.8■□□□□ 0.28
LDLR-213ENST00000560502 POLR3DP05423 398 aaPredicted RBP16.8■□□□□ 0.28
LDLR-213ENST00000560502 C8orf34Q49A92 452 aa16.8■□□□□ 0.28
LDLR-213ENST00000560502 SLC9C2Q5TAH2 1124 aa16.8■□□□□ 0.28
LDLR-213ENST00000560502 TRPV1Q8NER1 839 aa16.8■□□□□ 0.28
LDLR-213ENST00000560502 UBE2OQ9C0C9 1292 aaKnown RBP16.8■□□□□ 0.28
LDLR-213ENST00000560502 DCP1AQ9NPI6 582 aaPredicted RBP16.8■□□□□ 0.28
LDLR-213ENST00000560502 MCM9Q9NXL9 1143 aa16.8■□□□□ 0.28
LDLR-213ENST00000560502 COL6A3P12111 3177 aa16.8■□□□□ 0.28
LDLR-213ENST00000560502 MSCO60682 206 aa16.79■□□□□ 0.28
LDLR-213ENST00000560502 WDR78Q5VTH9 848 aa16.79■□□□□ 0.28
LDLR-213ENST00000560502 PLEKHM2Q8IWE5 1019 aa16.79■□□□□ 0.28
LDLR-213ENST00000560502 LCORLQ8N3X6 602 aa16.79■□□□□ 0.28
LDLR-213ENST00000560502 SDR42E1Q8WUS8 393 aa16.79■□□□□ 0.28
LDLR-213ENST00000560502 IVNS1ABPQ9Y6Y0 642 aa16.79■□□□□ 0.28
LDLR-213ENST00000560502 COL11A1P12107 1806 aaPredicted RBP16.79■□□□□ 0.28
LDLR-213ENST00000560502 ZNFX1Q9P2E3 1918 aaKnown RBP16.78■□□□□ 0.28
LDLR-213ENST00000560502 CYP2D6P10635 497 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 CYBAP13498 195 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 CYP2C19P33261 490 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 ATP2B2Q01814 1243 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 COG2Q14746 738 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 KIAA1755Q5JYT7 1200 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 DEFB123Q8N688 67 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 SLC44A5Q8NCS7 719 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 SLC17A8Q8NDX2 589 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 SHCBP1Q8NEM2 672 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 LPAR1Q92633 364 aa16.78■□□□□ 0.28
LDLR-213ENST00000560502 MOV10L1Q9BXT6 1211 aaKnown RBP16.78■□□□□ 0.28
LDLR-213ENST00000560502 RBM19Q9Y4C8 960 aaKnown RBP16.78■□□□□ 0.28
LDLR-213ENST00000560502 SALL3Q9BXA9 1300 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 GOLIM4O00461 696 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 OLFML2BQ68BL8 750 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 TMEM179Q6ZVK1 233 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 Q7L0L9 218 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 CLASRPQ8N2M8 674 aaKnown RBP16.77■□□□□ 0.28
LDLR-213ENST00000560502 DNAJC2Q99543 621 aaKnown RBP16.77■□□□□ 0.28
LDLR-213ENST00000560502 SPATC1LQ9H0A9 340 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 HOXC10Q9NYD6 342 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 SWAP70Q9UH65 585 aa16.77■□□□□ 0.28
LDLR-213ENST00000560502 GREB1LQ9C091 1923 aaPredicted RBP16.76■□□□□ 0.27
LDLR-213ENST00000560502 DNM1LO00429 736 aa16.76■□□□□ 0.27
LDLR-213ENST00000560502 MPHOSPH10O00566 681 aaKnown RBP16.76■□□□□ 0.27
LDLR-213ENST00000560502 ADORA2AP29274 412 aa16.76■□□□□ 0.27
LDLR-213ENST00000560502 TTC22Q5TAA0 569 aa16.76■□□□□ 0.27
LDLR-213ENST00000560502 SIAH1Q8IUQ4 282 aa16.76■□□□□ 0.27
LDLR-213ENST00000560502 TANGO6Q9C0B7 1094 aa16.76■□□□□ 0.27
LDLR-213ENST00000560502 SENP6Q9GZR1 1112 aaPredicted RBP16.76■□□□□ 0.27
LDLR-213ENST00000560502 MTMR10Q9NXD2 777 aa16.76■□□□□ 0.27
LDLR-213ENST00000560502 STRNO43815 780 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 ERCC3P19447 782 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 MX1P20591 662 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 ADD2P35612 726 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 MDM2Q00987 491 aaPredicted RBP16.75■□□□□ 0.27
LDLR-213ENST00000560502 CLEC10AQ8IUN9 316 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 MB21D1Q8N884 522 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 DYNLL2Q96FJ2 89 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 ARMT1Q9H993 441 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 STXBP5LQ9Y2K9 1186 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 TMX2Q9Y320 296 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 PLXNA1Q9UIW2 1896 aa16.75■□□□□ 0.27
LDLR-213ENST00000560502 APBB1O00213 710 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 PRKAB2O43741 272 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 COBLO75128 1261 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 IFIT2P09913 472 aaKnown RBP16.74■□□□□ 0.27
LDLR-213ENST00000560502 AKR1B1P15121 316 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 CNGA1P29973 690 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 DSG3P32926 999 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 PDE1AP54750 535 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms