RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 TNS1Q9HBL0 1735 aaKnown RBP16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 TYW1BQ6NUM6 668 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 USP17L2Q6R6M4 530 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 C16orf86Q6ZW13 317 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 ZFPM1Q8IX07 1006 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 MAD2L2Q9UI95 211 aa16.19■□□□□ 0.18
CARMIL3-203ENST00000560349 DDX60LQ5H9U9 1706 aaKnown RBP16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 SLX4Q8IY92 1834 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 CYTH3O43739 400 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 SCG2P13521 617 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 XBP1P17861 261 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 RBM5P52756 815 aaKnown RBP eCLIP16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 NLRP5P59047 1200 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 PNOCQ13519 176 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 STX1AQ16623 288 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 HOMER1Q86YM7 354 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 PDCL3Q9H2J4 239 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 NRXN2Q9P2S2 1712 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 PPP6R2O75170 966 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 ZNF174Q15697 407 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 SHROOM1Q2M3G4 852 aaPredicted RBP16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 LONRF3Q496Y0 759 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 PIK3AP1Q6ZUJ8 805 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 GRAMD1CQ8IYS0 662 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 C17orf53Q8N3J3 647 aaPredicted RBP16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 KRI1Q8N9T8 703 aaKnown RBP16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 CAMKK2Q96RR4 588 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 VAT1LQ9HCJ6 419 aa16.18■□□□□ 0.18
CARMIL3-203ENST00000560349 DLEC1Q9Y238 1755 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 UQCRHLA0A096LP55 91 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 CTAGE5O15320 804 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 UQCRHP07919 91 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 PLCG2P16885 1265 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 PPP2R5BQ15173 497 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 RILPL1Q5EBL4 403 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 DGKHQ86XP1 1220 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 SLF2Q8IX21 1173 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 LRRC47Q8N1G4 583 aaKnown RBP16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 AOPEPQ8N6M6 819 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 FAM163AQ96GL9 167 aaPredicted RBP16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 KIAA1468Q9P260 1216 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 C21orf2O43822 256 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 RESP18Q5W5W9 173 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 CDC42EP5Q6NZY7 148 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 STK32BQ9NY57 414 aa16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 FBXO2Q9UK22 296 aaPredicted RBP16.17■□□□□ 0.18
CARMIL3-203ENST00000560349 FRMPD2Q68DX3 1309 aaPredicted RBP16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 ECE2O60344 883 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 AKR1B1P15121 316 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 KIF5BP33176 963 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 IQCB1Q15051 598 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 TMED8Q6PL24 325 aaPredicted RBP16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 HEATR3Q7Z4Q2 680 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 TRIM5Q9C035 493 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 KCNH3Q9ULD8 1083 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 PFKFB3Q16875 520 aaPredicted RBP16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 APOBEC3HQ6NTF7 200 aaKnown RBP16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 UBA5Q9GZZ9 404 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 HPSEQ9Y251 543 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 MYH1P12882 1939 aa16.16■□□□□ 0.18
CARMIL3-203ENST00000560349 ZBTB22O15209 634 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 ATP2B2Q01814 1243 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 KIAA2012Q0VF49 1180 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 CSRNP2Q9H175 543 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 POLR2DO15514 142 aaKnown RBP16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 CUTAO60888 179 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 GRM4Q14833 912 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 TEKT1Q969V4 418 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 SCN9AQ15858 1988 aa16.15■□□□□ 0.18
CARMIL3-203ENST00000560349 TRIM75PA6NK02 468 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 BECN2A8MW95 431 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 KLRF2D3W0D1 207 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 RAD21O60216 631 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 CRKP46108 304 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 ZRSR1Q15695 479 aaKnown RBP16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 WWC2Q6AWC2 1192 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 METTL16Q86W50 562 aaKnown RBP16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 DHX40Q8IX18 779 aaKnown RBP16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 EPSTI1Q96J88 318 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 FAM13BQ9NYF5 915 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 NRBP1Q9UHY1 535 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 USP17L5A8MUK1 530 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 GOLGA6L19H0YKK7 550 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 MPHOSPH10O00566 681 aaKnown RBP16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 MCM7P33993 719 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 CNNM3Q8NE01 707 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 TNFRSF25Q93038 417 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 ANO10Q9NW15 660 aa16.14■□□□□ 0.17
CARMIL3-203ENST00000560349 PTPREP23469 700 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 DRC7Q8IY82 874 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 NEDD1Q8NHV4 660 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 BRMS1Q9HCU9 246 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 CASP1P29466 404 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 FOXP4Q8IVH2 680 aaPredicted RBP16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 ZNF287Q9HBT7 754 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 PRDM4Q9UKN5 801 aa16.13■□□□□ 0.17
CARMIL3-203ENST00000560349 A0A087X0B3 334 aa16.12■□□□□ 0.17
CARMIL3-203ENST00000560349 VWA3AA6NCI4 1184 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms