RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TYW1BQ6NUM6 668 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 HSD3B7Q9H2F3 369 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 SPTLC3Q9NUV7 552 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 SRPRBQ9Y5M8 271 aaKnown RBP12.16□□□□□ -0.46
CUX1-217ENST00000558836 TPM3P06753 285 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 ATP2B4P23634 1241 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 PTGDRQ13258 359 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 SLC35G1Q2M3R5 365 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 TRMT44Q8IYL2 757 aaKnown RBP12.16□□□□□ -0.46
CUX1-217ENST00000558836 RGS22Q8NE09 1264 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 DPF2Q92785 391 aa12.16□□□□□ -0.46
CUX1-217ENST00000558836 ZNF219Q9P2Y4 722 aaPredicted RBP12.16□□□□□ -0.46
CUX1-217ENST00000558836 GSTO1P78417 241 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 MDM2Q00987 491 aaPredicted RBP12.15□□□□□ -0.46
CUX1-217ENST00000558836 POSTNQ15063 836 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 TMC6Q7Z403 805 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 VAT1LQ9HCJ6 419 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 FANCLQ9NW38 375 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 USP27XA6NNY8 438 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 CYTH3O43739 400 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 BBOX1O75936 387 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 RASA1P20936 1047 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 SCNN1DP51172 638 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 EIF6P56537 245 aaKnown RBP12.15□□□□□ -0.46
CUX1-217ENST00000558836 CLEC10AQ8IUN9 316 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 AMOTL1Q8IY63 956 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 SYMPKQ92797 1274 aaKnown RBP12.15□□□□□ -0.46
CUX1-217ENST00000558836 TMEM47Q9BQJ4 181 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 TRMT1Q9NXH9 659 aaKnown RBP12.15□□□□□ -0.46
CUX1-217ENST00000558836 UBR3Q6ZT12 1888 aa12.15□□□□□ -0.46
CUX1-217ENST00000558836 FAM237AA0A1B0GTK4 181 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 COBLO75128 1261 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 SKILP12757 684 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 GOLGA8FQ08AF8 430 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 GOLGA8DPQ0D2H9 430 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 TTC38Q5R3I4 469 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 HOMER1Q86YM7 354 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 BRMS1Q9HCU9 246 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 MAD2L2Q9UI95 211 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 MAN1B1Q9UKM7 699 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 FAM205AQ6ZU69 1335 aa12.15□□□□□ -0.47
CUX1-217ENST00000558836 PPEF1O14829 653 aaPredicted RBP12.14□□□□□ -0.47
CUX1-217ENST00000558836 LDHCP07864 332 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 IL1R1P14778 569 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 CDK8P49336 464 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 PPP4CP60510 307 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 PFKFB3Q16875 520 aaPredicted RBP12.14□□□□□ -0.47
CUX1-217ENST00000558836 SLC27A3Q5K4L6 730 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 COL23A1Q86Y22 540 aaPredicted RBP12.14□□□□□ -0.47
CUX1-217ENST00000558836 TNFRSF25Q93038 417 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 EYA3Q99504 573 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 KCNQ5Q9NR82 932 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 CEP131Q9UPN4 1083 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 FLT1P17948 1338 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 TPM2P07951 284 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 CDC25BP30305 580 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 KIF5BP33176 963 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 FANCCQ00597 558 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 USP17L2Q6R6M4 530 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 HEATR3Q7Z4Q2 680 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 SMYD4Q8IYR2 804 aaPredicted RBP12.14□□□□□ -0.47
CUX1-217ENST00000558836 KIAA1551Q9HCM1 1747 aa12.14□□□□□ -0.47
CUX1-217ENST00000558836 GPR75-ASB3A0A0A6YYF3 556 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 ACTN4O43707 911 aaKnown RBP12.13□□□□□ -0.47
CUX1-217ENST00000558836 SERPINC1P01008 464 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 RHBDL3P58872 404 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 FMR1Q06787 632 aaKnown RBP eCLIP12.13□□□□□ -0.474e-6■■■■□ 21.6
CUX1-217ENST00000558836 DGKHQ86XP1 1220 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 ARID3AQ99856 593 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 BPIFA3Q9BQP9 254 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 SMTNL1A8MU46 457 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 APBA3O96018 575 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 IL17AQ16552 155 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 KLHL10Q6JEL2 608 aa12.13□□□□□ -0.47
CUX1-217ENST00000558836 TMEM232C9JQI7 657 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 MYL5Q02045 173 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 TPD52L1Q16890 204 aaPredicted RBP12.12□□□□□ -0.47
CUX1-217ENST00000558836 CFAP100Q494V2 611 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 CERS5Q8N5B7 392 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 ZNF592Q92610 1267 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 SMARCE1Q969G3 411 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 UBA5Q9GZZ9 404 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 BLZF1Q9H2G9 400 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 HOXA10P31260 410 aaPredicted RBP12.12□□□□□ -0.47
CUX1-217ENST00000558836 STX17P56962 302 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 UBASH3AP57075 661 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 WWC2Q6AWC2 1192 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 CEP95Q96GE4 821 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 ZC3H12CQ9C0D7 883 aaKnown RBP12.12□□□□□ -0.47
CUX1-217ENST00000558836 DAGLAQ9Y4D2 1042 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 KLRF2D3W0D1 207 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 MMP10P09238 476 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 TPM4P67936 248 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 GLIPR1L2Q4G1C9 344 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 ZNF622Q969S3 477 aaKnown RBP eCLIP12.12□□□□□ -0.471e-7■■□□□ 14
CUX1-217ENST00000558836 PLIN2Q99541 437 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 PCDHAC2Q9Y5I4 1007 aa12.12□□□□□ -0.47
CUX1-217ENST00000558836 CCZ1BP86790 482 aa12.11□□□□□ -0.47
CUX1-217ENST00000558836 CCZ1P86791 482 aaPredicted RBP12.11□□□□□ -0.47
CUX1-217ENST00000558836 ARMCX5Q6P1M9 558 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms