RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 XDHP47989 1333 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 ZSCAN12O43309 604 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 TBC1D9BQ66K14 1250 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 SH3RF1Q7Z6J0 888 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 ELOA2Q8IYF1 753 aaPredicted RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 IGSF22Q8N9C0 903 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 LINC00116Q8NCU8 138 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 DCP1AQ9NPI6 582 aaPredicted RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 FAM53CQ9NYF3 392 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 SYNRGQ9UMZ2 1314 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 BSDC1Q9NW68 430 aaPredicted RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 SRP68Q9UHB9 627 aaKnown RBP14.66□□□□□ -0.06
LDLR-207ENST00000558013 CTNND2Q9UQB3 1225 aa14.66□□□□□ -0.06
LDLR-207ENST00000558013 CNTNAP5Q8WYK1 1306 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 XBP1P17861 261 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 RASGRP2Q7LDG7 609 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 EEF2KMTQ96G04 330 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 SPATA31A1Q5TZJ5 1347 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 EP400Q96L91 3159 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 USP17L8P0C7I0 530 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 CASQ1P31415 396 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 CASP14P31944 242 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 FXR1P51114 621 aaKnown RBP eCLIP14.65□□□□□ -0.06
LDLR-207ENST00000558013 UBE4AQ14139 1066 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 SPATA1Q5VX52 437 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 KIFC2Q96AC6 838 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 PLIN2Q99541 437 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 ADD3Q9UEY8 706 aaKnown RBP14.65□□□□□ -0.06
LDLR-207ENST00000558013 DACH1Q9UI36 760 aa14.65□□□□□ -0.06
LDLR-207ENST00000558013 CACNA1SQ13698 1873 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 ERCC5P28715 1186 aaPredicted RBP14.64□□□□□ -0.07
LDLR-207ENST00000558013 NLRP5P59047 1200 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 KANK3Q6NY19 840 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 STAG2Q8N3U4 1231 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 TRIML1Q8N9V2 468 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 DYNLL2Q96FJ2 89 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 BRIP1Q9BX63 1249 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 PP2D1A8MPX8 630 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 AKR1B15C9JRZ8 316 aaPredicted RBP14.64□□□□□ -0.07
LDLR-207ENST00000558013 PNMA6AP0CW24 399 aaPredicted RBP14.64□□□□□ -0.07
LDLR-207ENST00000558013 TERF2Q15554 542 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 TEX35Q5T0J7 233 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 VPS16Q9H269 839 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 MYH6P13533 1939 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 FAM205AQ6ZU69 1335 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 KDM4FA0A1W2PPD8 638 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 CCP110O43303 1012 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 RCAN1P53805 252 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 RCSD1Q6JBY9 416 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 TYW1BQ6NUM6 668 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 MTA3Q9BTC8 594 aa14.64□□□□□ -0.07
LDLR-207ENST00000558013 MYO1BO43795 1136 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 MAP3K9P80192 1104 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 DHX8Q14562 1220 aaKnown RBP14.63□□□□□ -0.07
LDLR-207ENST00000558013 AMIGO3Q86WK7 504 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 CCDC12Q8WUD4 166 aaPredicted RBP14.63□□□□□ -0.07
LDLR-207ENST00000558013 CPVLQ9H3G5 476 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.63□□□□□ -0.078e-10■□□□□ 8.4
LDLR-207ENST00000558013 GDAQ9Y2T3 454 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 MYH13Q9UKX3 1938 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 GYPCP04921 128 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 PLA2G4AP47712 749 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 ATP2C1P98194 919 aaPredicted RBP14.63□□□□□ -0.07
LDLR-207ENST00000558013 E2F4Q16254 413 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 CDKAL1Q5VV42 579 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 RRAGBQ5VZM2 374 aa14.63□□□□□ -0.07
LDLR-207ENST00000558013 CTCFLQ8NI51 663 aaPredicted RBP14.63□□□□□ -0.07
LDLR-207ENST00000558013 TSPY2A6NKD2 308 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 SCG2P13521 617 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 SF3B3Q15393 1217 aaKnown RBP14.62□□□□□ -0.07
LDLR-207ENST00000558013 FBXO33Q7Z6M2 555 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 FCHSD1Q86WN1 690 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 ACRBPQ8NEB7 543 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 GPR101Q96P66 508 aaPredicted RBP14.62□□□□□ -0.07
LDLR-207ENST00000558013 MCM9Q9NXL9 1143 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 ADGRG1Q9Y653 693 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 DUOX1Q9NRD9 1551 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 SASH3O75995 380 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 FGRP09769 529 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 PPP2R3AQ06190 1150 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 GRIK5Q16478 980 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 SLC44A5Q8NCS7 719 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 ZCCHC17Q9NP64 241 aaKnown RBP14.62□□□□□ -0.07
LDLR-207ENST00000558013 TAB2Q9NYJ8 693 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 MRFAP1Q9Y605 127 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 PLCH1Q4KWH8 1693 aa14.62□□□□□ -0.07
LDLR-207ENST00000558013 PBX1P40424 430 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 RPS8P62241 208 aaKnown RBP14.61□□□□□ -0.07
LDLR-207ENST00000558013 KRT31Q15323 416 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 SLC35G1Q2M3R5 365 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 FAM182BQ5T319 152 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 PPFIBP1Q86W92 1011 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 FERMT2Q96AC1 680 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 IL17RBQ9NRM6 502 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 USP17L3A6NCW0 530 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 USP17L4A6NCW7 530 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 TRIM49BA6NDI0 452 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 ZRANB2O95218 330 aaKnown RBP eCLIP14.61□□□□□ -0.07
LDLR-207ENST00000558013 PDXDC2PQ6P474 469 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 USP17L1Q7RTZ2 530 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms