RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 AGAP11Q8TF27 550 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 KCNN1Q92952 543 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 HVCN1Q96D96 273 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 AOX1Q06278 1338 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 SPDYE5A6NIY4 337 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 E7EVH7 732 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 ALADP13716 330 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 NNTQ13423 1086 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 SGSM1Q2NKQ1 1148 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 ZMYM1Q5SVZ6 1142 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 GALNT17Q6IS24 598 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 GSPT2Q8IYD1 628 aaKnown RBP15.41■□□□□ 0.06
SHMT2-226ENST00000556825 GBP7Q8N8V2 638 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-226ENST00000556825 OPTNQ96CV9 577 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 RPGRIP1Q96KN7 1286 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 NDST4Q9H3R1 872 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 PREBQ9HCU5 417 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 CEP126Q9P2H0 1117 aa15.41■□□□□ 0.06
SHMT2-226ENST00000556825 SETD1AO15047 1707 aaKnown RBP15.41■□□□□ 0.06
SHMT2-226ENST00000556825 CCND1P24385 295 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 TSNAXIP1Q2TAA8 658 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 ADCK5Q3MIX3 580 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 SND1Q7KZF4 910 aaKnown RBP eCLIP15.4■□□□□ 0.062e-6■■□□□ 11.8
SHMT2-226ENST00000556825 ELOA2Q8IYF1 753 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-226ENST00000556825 TEKT1Q969V4 418 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 ESF1Q9H501 851 aaKnown RBP15.4■□□□□ 0.06
SHMT2-226ENST00000556825 INTS13Q9NVM9 706 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 MYBL1P10243 752 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 MRPS35P82673 323 aaKnown RBP15.4■□□□□ 0.06
SHMT2-226ENST00000556825 MYL5Q02045 173 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 CUL4BQ13620 913 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 INF2Q27J81 1249 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 KBTBD12Q3ZCT8 623 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 PPP4R3AQ6IN85 833 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 MAATS1Q7Z4T9 603 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 SMCR8Q8TEV9 937 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-226ENST00000556825 HDAC7Q8WUI4 952 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 TMCO1Q9UM00 188 aa15.4■□□□□ 0.06
SHMT2-226ENST00000556825 A0A0U1RQJ8 604 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 SOWAHDA6NJG2 315 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 MAP3K13O43283 966 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 HSF2BPO75031 334 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 ZMYND10O75800 440 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 UPP2O95045 317 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 PTPN21Q16825 1174 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 SLC4A8Q2Y0W8 1093 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 SPECC1LQ69YQ0 1117 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 CCT6BQ92526 530 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 MRPS27Q92552 414 aaKnown RBP15.39■□□□□ 0.05
SHMT2-226ENST00000556825 PANX2Q96RD6 677 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 NAA15Q9BXJ9 866 aaKnown RBP15.39■□□□□ 0.05
SHMT2-226ENST00000556825 BZW2Q9Y6E2 419 aaKnown RBP15.39■□□□□ 0.05
SHMT2-226ENST00000556825 KDM6AO15550 1401 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-226ENST00000556825 ADAM9Q13443 819 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 ZNF268Q14587 947 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-226ENST00000556825 KRT24Q2M2I5 525 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 ATL3Q6DD88 541 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 RAD9BQ6WBX8 426 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 RASGRP2Q7LDG7 609 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 SH2D3CQ8N5H7 860 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 GGNBP2Q9H3C7 697 aa15.39■□□□□ 0.05
SHMT2-226ENST00000556825 CAPN15O75808 1086 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 SLC3A2P08195 630 aaKnown RBP15.38■□□□□ 0.05
SHMT2-226ENST00000556825 CCDC92Q53HC0 331 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-226ENST00000556825 CCDC155Q8N6L0 562 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 CCDC63Q8NA47 563 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 CNBD1Q8NA66 436 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 LZICQ8WZA0 190 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 NAF1Q96HR8 494 aaKnown RBP15.38■□□□□ 0.05
SHMT2-226ENST00000556825 SEC16BQ96JE7 1060 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 DHRS1Q96LJ7 313 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 TRPV5Q9NQA5 729 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 TUBGCP4Q9UGJ1 667 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 TTF2Q9UNY4 1162 aaKnown RBP15.38■□□□□ 0.05
SHMT2-226ENST00000556825 LEMD3Q9Y2U8 911 aa15.38■□□□□ 0.05
SHMT2-226ENST00000556825 POLE2P56282 527 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 TWISTNBQ3B726 338 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 ANKRD20A2Q5SQ80 823 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 ANKRD20A1Q5TYW2 823 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 ANKRD20A3Q5VUR7 823 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 SPTY2D1Q68D10 685 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 TRAPPC11Q7Z392 1133 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 TMEM110Q86TL2 294 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 OGFOD1Q8N543 542 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 ZCRB1Q8TBF4 217 aaKnown RBP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 CORO1BQ9BR76 489 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 BRD8Q9H0E9 1235 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 PANK4Q9NVE7 773 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 SYNPO2Q9UMS6 1093 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 USP32Q8NFA0 1604 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 GMNCA6NCL1 334 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 CFAP73A6NFT4 308 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 SMAPO00193 183 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 CEP104O60308 925 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 CLTAP09496 248 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 NR1D1P20393 614 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 SAFB2Q14151 953 aaKnown RBP eCLIP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 JAKMIP2Q96AA8 810 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 RRP36Q96EU6 259 aaKnown RBP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 IWS1Q96ST2 819 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms