RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 SPTLC2O15270 562 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 HLA-DOAP06340 250 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 ME1P48163 572 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 EIF6P56537 245 aaKnown RBP16.98■□□□□ 0.31
VPS33B-205ENST00000556096 SLC39A14Q15043 492 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 PHF20Q9BVI0 1012 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 NUP62CLQ9H1M0 184 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 DHX36Q9H2U1 1008 aaKnown RBP16.98■□□□□ 0.31
VPS33B-205ENST00000556096 STX8Q9UNK0 236 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 VIL1P09327 827 aaKnown RBP16.97■□□□□ 0.31
VPS33B-205ENST00000556096 TOP1P11387 765 aaKnown RBP16.97■□□□□ 0.31
VPS33B-205ENST00000556096 SF3A1Q15459 793 aaKnown RBP16.97■□□□□ 0.31
VPS33B-205ENST00000556096 RSBN1LQ6PCB5 846 aaPredicted RBP16.97■□□□□ 0.31
VPS33B-205ENST00000556096 CCAR1Q8IX12 1150 aaKnown RBP16.97■□□□□ 0.31
VPS33B-205ENST00000556096 LZTS2Q9BRK4 669 aa16.97■□□□□ 0.31
VPS33B-205ENST00000556096 CLSTN2Q9H4D0 955 aa16.97■□□□□ 0.31
VPS33B-205ENST00000556096 MAD2L2Q9UI95 211 aa16.97■□□□□ 0.31
VPS33B-205ENST00000556096 ZBTB12Q9Y330 459 aaPredicted RBP16.97■□□□□ 0.31
VPS33B-205ENST00000556096 PALM3A6NDB9 673 aaPredicted RBP16.96■□□□□ 0.31
VPS33B-205ENST00000556096 NR1I2O75469 434 aa16.96■□□□□ 0.31
VPS33B-205ENST00000556096 RBM5P52756 815 aaKnown RBP eCLIP16.96■□□□□ 0.31
VPS33B-205ENST00000556096 NFIAQ12857 509 aa16.96■□□□□ 0.31
VPS33B-205ENST00000556096 PFKFB3Q16875 520 aaPredicted RBP16.96■□□□□ 0.31
VPS33B-205ENST00000556096 FUCA2Q9BTY2 467 aa16.96■□□□□ 0.31
VPS33B-205ENST00000556096 PANK2Q9BZ23 570 aa16.96■□□□□ 0.31
VPS33B-205ENST00000556096 IGKV6D-41A0A0C4DH26 115 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 PPP6R2O75170 966 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 SCG2P13521 617 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 RILPL1Q5EBL4 403 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 CIAPIN1Q6FI81 312 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 RBM43Q6ZSC3 357 aaKnown RBP16.96■□□□□ 0.3
VPS33B-205ENST00000556096 SHISA4Q96DD7 197 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 CEP95Q96GE4 821 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 VPS54Q9P1Q0 977 aa16.96■□□□□ 0.3
VPS33B-205ENST00000556096 SMARCA1P28370 1054 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 PTPAQ15257 358 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 MAP3K11Q16584 847 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 CCDC73Q6ZRK6 1079 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 JMYQ8N9B5 988 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 ENGASEQ8NFI3 743 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 GMLQ99445 158 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.95■□□□□ 0.3
VPS33B-205ENST00000556096 MTMR4Q9NYA4 1195 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 FAM198AQ9UFP1 575 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 PCDHAC2Q9Y5I4 1007 aa16.95■□□□□ 0.3
VPS33B-205ENST00000556096 SHTN1A0MZ66 631 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 SHMT1P34896 483 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 KRT2P35908 639 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 FAM160A1Q05DH4 1040 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 CFAP100Q494V2 611 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 FAM177A1Q8N128 213 aaPredicted RBP16.94■□□□□ 0.3
VPS33B-205ENST00000556096 STAG2Q8N3U4 1231 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 MRPS27Q92552 414 aaKnown RBP16.94■□□□□ 0.3
VPS33B-205ENST00000556096 CCDC17Q96LX7 622 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 TNMDQ9H2S6 317 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 GOLPH3LQ9H4A5 285 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 BRMS1Q9HCU9 246 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 SH3GLB2Q9NR46 395 aa16.94■□□□□ 0.3
VPS33B-205ENST00000556096 hCG_1642624A0A1W2PR95 340 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 CTAGE5O15320 804 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 ENTPD3O75355 529 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 AKR1B1P15121 316 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 SNW1Q13573 536 aaKnown RBP16.93■□□□□ 0.3
VPS33B-205ENST00000556096 PPP4R3BQ5MIZ7 849 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 AXDND1Q5T1B0 1012 aaPredicted RBP16.93■□□□□ 0.3
VPS33B-205ENST00000556096 ZFPM1Q8IX07 1006 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 FSIP1Q8NA03 581 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 PI4KBQ9UBF8 816 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 CMA1P23946 247 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 GMPSP49915 693 aaPredicted RBP16.93■□□□□ 0.3
VPS33B-205ENST00000556096 TOB1P50616 345 aaPredicted RBP16.93■□□□□ 0.3
VPS33B-205ENST00000556096 NR5A1Q13285 461 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 FOXP4Q8IVH2 680 aaPredicted RBP16.93■□□□□ 0.3
VPS33B-205ENST00000556096 OXER1Q8TDS5 423 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 SPZ1Q9BXG8 430 aa16.93■□□□□ 0.3
VPS33B-205ENST00000556096 MORC2Q9Y6X9 1032 aaPredicted RBP16.93■□□□□ 0.3
VPS33B-205ENST00000556096 COL2A1P02458 1487 aaPredicted RBP16.92■□□□□ 0.3
VPS33B-205ENST00000556096 GLTPD2A6NH11 291 aa16.92■□□□□ 0.3
VPS33B-205ENST00000556096 PARP1P09874 1014 aaKnown RBP16.92■□□□□ 0.3
VPS33B-205ENST00000556096 CCDC192P0DO97 292 aa16.92■□□□□ 0.3
VPS33B-205ENST00000556096 NPY5RQ15761 445 aa16.92■□□□□ 0.3
VPS33B-205ENST00000556096 DPY19L2Q6NUT2 758 aa16.92■□□□□ 0.3
VPS33B-205ENST00000556096 METTL16Q86W50 562 aaKnown RBP16.92■□□□□ 0.3
VPS33B-205ENST00000556096 FMR1NBQ8N0W7 255 aaPredicted RBP16.92■□□□□ 0.3
VPS33B-205ENST00000556096 AGBL3Q8NEM8 1001 aa16.92■□□□□ 0.3
VPS33B-205ENST00000556096 HDAC9Q9UKV0 1011 aa16.92■□□□□ 0.3
VPS33B-205ENST00000556096 MYH8P13535 1937 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 DDTLA6NHG4 134 aaPredicted RBP16.91■□□□□ 0.3
VPS33B-205ENST00000556096 KLRF2D3W0D1 207 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 TTLL1O95922 423 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 CALML3P27482 149 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 CACNB3P54284 484 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 TNIP1Q15025 636 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 CAMK4Q16566 473 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 UVSSAQ2YD98 709 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 GPC2Q8N158 579 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 ANP32BQ92688 251 aaKnown RBP16.91■□□□□ 0.3
VPS33B-205ENST00000556096 TNFRSF25Q93038 417 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 PRMT6Q96LA8 375 aaPredicted RBP16.91■□□□□ 0.3
VPS33B-205ENST00000556096 TDRD3Q9H7E2 651 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms