RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 HELBQ8NG08 1087 aaPredicted RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 RSRC1Q96IZ7 334 aaKnown RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 PPP1R9BQ96SB3 815 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 SEC62Q99442 399 aaKnown RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 GPCPD1Q9NPB8 672 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 ZNF202O95125 648 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 STAT1P42224 750 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 CTSWP56202 376 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 KLHL30Q0D2K2 578 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 WHAMMP3Q1A5X7 153 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 JARID2Q92833 1246 aaPredicted RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 NRBP2Q9NSY0 501 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 FAM135BQ49AJ0 1406 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 I3L4J1 428 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 USP14P54578 494 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 ATP11AP98196 1134 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 ARMT1Q9H993 441 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 SLAIN2Q9P270 581 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 CTTNBP2NLQ9P2B4 639 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 CTNND2Q9UQB3 1225 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 CLASP1Q7Z460 1538 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 PRPF6O94906 941 aaKnown RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 LONP1P36776 959 aaKnown RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 TXKP42681 527 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 STX17P56962 302 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 RBM6P78332 1123 aaKnown RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 DNAJC21Q5F1R6 531 aaKnown RBP11.86□□□□□ -0.51
ACTN1-216ENST00000556083 FAM160B1Q5W0V3 765 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 KCNK9Q9NPC2 374 aa11.86□□□□□ -0.51
ACTN1-216ENST00000556083 ARHGEF5Q12774 1597 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 TMEM110-MUSTN1A8MSY1 372 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 F8W8V4 182 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 GAS7O60861 476 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 XRCC6P12956 609 aaKnown RBP eCLIP11.85□□□□□ -0.51
ACTN1-216ENST00000556083 DEPTORQ8TB45 409 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 UBE2Q2Q8WVN8 375 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 GJC1P36383 396 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 TFDP1Q14186 410 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 SEPT2Q15019 361 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 PHLDB2Q86SQ0 1253 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 MYCT1Q8N699 235 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 LZTFL1Q9NQ48 299 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 LCMT1Q9UIC8 334 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 PTPRTO14522 1441 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 SH3BP5O60239 455 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 TCP1P17987 556 aaKnown RBP11.85□□□□□ -0.51
ACTN1-216ENST00000556083 PPARAQ07869 468 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 CCDC62Q6P9F0 684 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 AFAP1L1Q8TED9 768 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 CALR3Q96L12 384 aaKnown RBP11.85□□□□□ -0.51
ACTN1-216ENST00000556083 HAUS7Q99871 368 aa11.85□□□□□ -0.51
ACTN1-216ENST00000556083 PPFIA3O75145 1194 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 TNNC2P02585 160 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 XRCC5P13010 732 aaKnown RBP11.84□□□□□ -0.51
ACTN1-216ENST00000556083 KRT9P35527 623 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 TIMM10P62072 90 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 NEDD9Q14511 834 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 NCAPH2Q6IBW4 605 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 TTLL7Q6ZT98 887 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 MYOCDQ8IZQ8 938 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 RETREG2Q8NC44 543 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 IFT81Q8WYA0 676 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 COPRSQ9NQ92 184 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ABCC4O15439 1325 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 NEURL1BA8MQ27 555 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 POLR2MP0CAP2 368 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 GAP43P17677 238 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 IL6STP40189 918 aaPredicted RBP11.84□□□□□ -0.51
ACTN1-216ENST00000556083 BRD3Q15059 726 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ASPRV1Q53RT3 343 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 OR8K1Q8NGG5 319 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 UBLCP1Q8WVY7 318 aaPredicted RBP11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ZFYVE16Q7Z3T8 1539 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 POLR2DO15514 142 aaKnown RBP11.84□□□□□ -0.51
ACTN1-216ENST00000556083 SLC12A2P55011 1212 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ALCAMQ13740 583 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 KMT5BQ4FZB7 885 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 SYT10Q6XYQ8 523 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 SND1Q7KZF4 910 aaKnown RBP eCLIP11.84□□□□□ -0.519e-7■□□□□ 8.5
ACTN1-216ENST00000556083 MIER3Q7Z3K6 550 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 LMNTD2Q8IXW0 634 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 RIC8AQ9NPQ8 531 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 RSPH14Q9UHP6 348 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 AMFRQ9UKV5 643 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ZNF532Q9HCE3 1301 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 NCKAP5LQ9HCH0 1330 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ATP7BP35670 1465 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 TFAP4Q01664 338 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 ZNF654Q8IZM8 581 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 BLIDQ8IZY5 108 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 GTF3C6Q969F1 213 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 HAUS4Q9H6D7 363 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 MRPL44Q9H9J2 332 aaKnown RBP11.84□□□□□ -0.51
ACTN1-216ENST00000556083 MYO1AQ9UBC5 1043 aa11.84□□□□□ -0.51
ACTN1-216ENST00000556083 PZPP20742 1482 aa11.83□□□□□ -0.51
ACTN1-216ENST00000556083 ZNF189O75820 626 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 GABPB1Q06547 395 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ODR4Q5SWX8 454 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ELMSAN1Q6PJG2 1045 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 BBS5Q8N3I7 341 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms