RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 PQBP1O60828 265 aaKnown RBP11.85□□□□□ -0.51
SCFD1-215ENST00000555259 COBLO75128 1261 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 RAB3GAP1Q15042 981 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 TATDN1Q6P1N9 297 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 ACER1Q8TDN7 264 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 MOV10L1Q9BXT6 1211 aaKnown RBP11.85□□□□□ -0.51
SCFD1-215ENST00000555259 PRDM12Q9H4Q4 367 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 RPAP3Q9H6T3 665 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-215ENST00000555259 TMEM39AQ9NV64 488 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 PBX2P40425 430 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 PBX4Q9BYU1 374 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 XPNPEP3Q9NQH7 507 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 HDAC5Q9UQL6 1122 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 ERCC3P19447 782 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 FAAP100Q0VG06 881 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 ADGRE1Q14246 886 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 CCDC85BQ15834 202 aaPredicted RBP11.84□□□□□ -0.51
SCFD1-215ENST00000555259 RNF180Q86T96 592 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 SHCBP1Q8NEM2 672 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 IL27Q8NEV9 243 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.84□□□□□ -0.511e-9■□□□□ 11.2
SCFD1-215ENST00000555259 C1QTNF1Q9BXJ1 281 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 SPATC1LQ9H0A9 340 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 SLC5A4Q9NY91 659 aa11.84□□□□□ -0.51
SCFD1-215ENST00000555259 ZNF521Q96K83 1311 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 A0A1W2PQ45 241 aaPredicted RBP11.83□□□□□ -0.52
SCFD1-215ENST00000555259 A0A1W2PQY0 241 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 GRXCR1A8MXD5 290 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 SRGAP3O43295 1099 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 PGK1P00558 417 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 UQCRFS1P1P0C7P4 283 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 RARBP10826 455 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 CCDC129Q6ZRS4 1044 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 ANKRD33Q7Z3H0 272 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 SLC44A5Q8NCS7 719 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 MAML3Q96JK9 1138 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 MEIS3Q99687 375 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 SNRKQ9NRH2 765 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 SERPINB13Q9UIV8 391 aa11.83□□□□□ -0.52
SCFD1-215ENST00000555259 SMCHD1A6NHR9 2005 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 COG2Q14746 738 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 ABCB5Q2M3G0 1257 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 CERKLQ49MI3 558 aaPredicted RBP11.82□□□□□ -0.52
SCFD1-215ENST00000555259 ABRAQ8N0Z2 381 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 TOX2Q96NM4 488 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 NECAB3Q96P71 396 aaPredicted RBP11.82□□□□□ -0.52
SCFD1-215ENST00000555259 HOXC10Q9NYD6 342 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 NRBP1Q9UHY1 535 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 SYNGAP1Q96PV0 1343 aa11.82□□□□□ -0.52
SCFD1-215ENST00000555259 DCDC2CA8MYV0 355 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 TIMP1P01033 207 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 IGFBP4P22692 258 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 DYNLL1P63167 89 aaKnown RBP11.81□□□□□ -0.52
SCFD1-215ENST00000555259 ALDH1L2Q3SY69 923 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 RASIP1Q5U651 963 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 C16orf59Q7L2K0 433 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 EHD4Q9H223 541 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 MROH8Q9H579 483 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 SMC4Q9NTJ3 1288 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 ARIH1Q9Y4X5 557 aaPredicted RBP11.81□□□□□ -0.52
SCFD1-215ENST00000555259 PIEZO1Q92508 2521 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 ROBO3Q96MS0 1386 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 PLXNA1Q9UIW2 1896 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 A0A0G2JMZ2 1700 aa11.81□□□□□ -0.52
SCFD1-215ENST00000555259 CYP2E1P05181 493 aaPredicted RBP11.8□□□□□ -0.52
SCFD1-215ENST00000555259 GUCY1A2P33402 732 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 MTX1Q13505 466 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 TMEM240Q5SV17 173 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 MFSD5Q6N075 450 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 NCAPG2Q86XI2 1143 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 TANGO6Q9C0B7 1094 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 CABP5Q9NP86 173 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 STARD7Q9NQZ5 370 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 TBX21Q9UL17 535 aa11.8□□□□□ -0.52
SCFD1-215ENST00000555259 ADAMTS4O75173 837 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 BMP1P13497 986 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 PPIGQ13427 754 aaKnown RBP eCLIP11.79□□□□□ -0.528e-8■■□□□ 12.9
SCFD1-215ENST00000555259 PLS1Q14651 629 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 CCDC174Q6PII3 467 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 PPP4R3CPQ6ZMV5 832 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 MB21D1Q8N884 522 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 LENG1Q96BZ8 264 aaPredicted RBP11.79□□□□□ -0.52
SCFD1-215ENST00000555259 CXXC1Q9P0U4 656 aaPredicted RBP11.79□□□□□ -0.52
SCFD1-215ENST00000555259 HCN4Q9Y3Q4 1203 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 MYH1P12882 1939 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 TCF20Q9UGU0 1960 aaKnown RBP11.79□□□□□ -0.52
SCFD1-215ENST00000555259 A0A1W2PRG0 241 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 FCER1AP12319 257 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 TAL1P17542 331 aaPredicted RBP11.79□□□□□ -0.52
SCFD1-215ENST00000555259 SHMT1P34896 483 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 USP5P45974 858 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 ACLYP53396 1101 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 SEPT2Q15019 361 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 NUP133Q8WUM0 1156 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 TINF2Q9BSI4 451 aa11.79□□□□□ -0.52
SCFD1-215ENST00000555259 TSEN34Q9BSV6 310 aaKnown RBP11.79□□□□□ -0.52
SCFD1-215ENST00000555259 E9PSI1 815 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 IGSF3O75054 1194 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 ZNF865P0CJ78 1059 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-215ENST00000555259 AKR1A1P14550 325 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms