RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ATG3Q9NT62 314 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 RNF19AQ9NV58 838 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 PIM2Q9P1W9 311 aa5.33□□□□□ -1.56
LIMA1-208ENST00000551691 FYCO1Q9BQS8 1478 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 EEA1Q15075 1411 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 PARD3Q8TEW0 1356 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 GCC2Q8IWJ2 1684 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 KRTAP4-8A0A0G2JLE6 195 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 GIPC1O14908 333 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 PHACTR2O75167 634 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 TNFRSF21O75509 655 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 ADMP35318 185 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 GSTM4Q03013 218 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 XKR5Q6UX68 686 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 WAPLQ7Z5K2 1190 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 BSNDQ8WZ55 320 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 ARMC5Q96C12 935 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 OSBPL1AQ9BXW6 950 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 ADGRE2Q9UHX3 823 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 LEMD3Q9Y2U8 911 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 PCDHGB7Q9Y5F8 929 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 EIF2AK4Q9P2K8 1649 aaKnown RBP5.32□□□□□ -1.56
LIMA1-208ENST00000551691 DUOX2Q9NRD8 1548 aa5.32□□□□□ -1.56
LIMA1-208ENST00000551691 XRN1Q8IZH2 1706 aaKnown RBP5.31□□□□□ -1.56
LIMA1-208ENST00000551691 RREB1Q92766 1687 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 ARHGEF5Q12774 1597 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 GADD45BO75293 160 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-208ENST00000551691 CLSTN1O94985 981 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 TNNI2P48788 182 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 USP11P51784 963 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 CHRNA2Q15822 529 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.31□□□□□ -1.56
LIMA1-208ENST00000551691 ZNF394Q53GI3 561 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 ANKRD13AQ8IZ07 590 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 SNX29Q8TEQ0 813 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.31□□□□□ -1.56
LIMA1-208ENST00000551691 TMPRSS13Q9BYE2 586 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 C12orf49Q9H741 205 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 PPP4R2Q9NY27 417 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 ANGEL1Q9UNK9 670 aaKnown RBP5.31□□□□□ -1.56
LIMA1-208ENST00000551691 HIF3AQ9Y2N7 669 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 CASZ1Q86V15 1759 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 ADGRL2O95490 1459 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 CEP162Q5TB80 1403 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 PLCH1Q4KWH8 1693 aa5.31□□□□□ -1.56
LIMA1-208ENST00000551691 USP32Q8NFA0 1604 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 SPATA31A1Q5TZJ5 1347 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 FAM95CA0A1B0GW59 222 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 MEGF11A6BM72 1044 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 FAM170BA6NMN3 283 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 TIAF1O95411 115 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 IGHA2P01877 340 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 CTSBP07858 339 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 ESRRAP11474 423 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-208ENST00000551691 SLC15A2Q16348 729 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 PEAR1Q5VY43 1037 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-208ENST00000551691 LNPKQ9C0E8 428 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 MTFR1LQ9H019 292 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 ZSWIM4Q9H7M6 989 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 FAM8A1Q9UBU6 413 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 NRXN3Q9Y4C0 1643 aa5.3□□□□□ -1.56
LIMA1-208ENST00000551691 RPRD2Q5VT52 1461 aaKnown RBP5.29□□□□□ -1.56
LIMA1-208ENST00000551691 PLSCR1O15162 318 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 SSBP05455 408 aaKnown RBP eCLIP5.29□□□□□ -1.56
LIMA1-208ENST00000551691 USP17L7P0C7H9 530 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 RAB6AP20340 208 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 TAF1CQ15572 869 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-208ENST00000551691 MSMPQ1L6U9 139 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 CCDC144BQ3MJ40 725 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 LDLRAD1Q5T700 205 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 NFXL1Q6ZNB6 911 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 JMYQ8N9B5 988 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 C2CD4AQ8NCU7 369 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-208ENST00000551691 SMG8Q8ND04 991 aaKnown RBP5.29□□□□□ -1.56
LIMA1-208ENST00000551691 CCDC74AQ96AQ1 378 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 TBC1D32Q96NH3 1257 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 SRCIN1Q9C0H9 1055 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 LGR6Q9HBX8 967 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 CYP4F12Q9HCS2 524 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 STK26Q9P289 416 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 DDX41Q9UJV9 622 aaKnown RBP5.29□□□□□ -1.56
LIMA1-208ENST00000551691 PTPN23Q9H3S7 1636 aa5.29□□□□□ -1.56
LIMA1-208ENST00000551691 LMTK2Q8IWU2 1503 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 DLC1Q96QB1 1528 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 ECEL1O95672 775 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 EDN3P14138 238 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 FOSL1P15407 271 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 SPRED3Q2MJR0 410 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 GIMAP6Q6P9H5 292 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 PAOXQ6QHF9 649 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 TP53INP2Q8IXH6 220 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 CKAP2LQ8IYA6 745 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 PMEPA1Q969W9 287 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 LRRC4CQ9HCJ2 640 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 STK32BQ9NY57 414 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 CCDC39Q9UFE4 941 aa5.28□□□□□ -1.56
LIMA1-208ENST00000551691 TTF2Q9UNY4 1162 aaKnown RBP5.28□□□□□ -1.56
LIMA1-208ENST00000551691 LRPPRCP42704 1394 aaKnown RBP5.28□□□□□ -1.56
LIMA1-208ENST00000551691 TECPR2O15040 1411 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 ABCC5O15440 1437 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms