RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TMEM179Q6ZVK1 233 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 LRCH3Q96II8 777 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 FLRT1Q9NZU1 646 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 DDX19BQ9UMR2 479 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 SYN1P17600 705 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 TDHQ8IZJ6 230 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 MIER1Q8N108 512 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 MB21D1Q8N884 522 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 SHCBP1Q8NEM2 672 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 LPAR1Q92633 364 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 CHMP4BQ9H444 224 aaKnown RBP15.54■□□□□ 0.08
PTCH1-218ENST00000548945 ATP8A2Q9NTI2 1148 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 ZBTB40Q9NUA8 1239 aa15.54■□□□□ 0.08
PTCH1-218ENST00000548945 DDX20Q9UHI6 824 aaKnown RBP15.54■□□□□ 0.08
PTCH1-218ENST00000548945 A0A1W2PRG0 241 aa15.53■□□□□ 0.08
PTCH1-218ENST00000548945 MPHOSPH10O00566 681 aaKnown RBP15.53■□□□□ 0.08
PTCH1-218ENST00000548945 LRRC26Q2I0M4 334 aa15.53■□□□□ 0.08
PTCH1-218ENST00000548945 OLFML2BQ68BL8 750 aa15.53■□□□□ 0.08
PTCH1-218ENST00000548945 LCORLQ8N3X6 602 aa15.53■□□□□ 0.08
PTCH1-218ENST00000548945 SDR42E1Q8WUS8 393 aa15.53■□□□□ 0.08
PTCH1-218ENST00000548945 DNAJC2Q99543 621 aaKnown RBP15.53■□□□□ 0.08
PTCH1-218ENST00000548945 SH2D4AQ9H788 454 aa15.53■□□□□ 0.08
PTCH1-218ENST00000548945 ATP5JP18859 108 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 SIRT2Q8IXJ6 389 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 NPLOC4Q8TAT6 608 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 CCDC17Q96LX7 622 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 MOV10L1Q9BXT6 1211 aaKnown RBP15.52■□□□□ 0.08
PTCH1-218ENST00000548945 TANGO6Q9C0B7 1094 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 UBE2OQ9C0C9 1292 aaKnown RBP15.52■□□□□ 0.08
PTCH1-218ENST00000548945 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.52■□□□□ 0.08
PTCH1-218ENST00000548945 SPATC1LQ9H0A9 340 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 ARHGEF10LQ9HCE6 1279 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 PAG1Q9NWQ8 432 aa15.52■□□□□ 0.08
PTCH1-218ENST00000548945 APBB1O00213 710 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 DNM1LO00429 736 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 CYBAP13498 195 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 ADORA2AP29274 412 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 DSG3P32926 999 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 ADD2P35612 726 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 EVX2Q03828 476 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 DPP9Q86TI2 863 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 ABRAQ8N0Z2 381 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 MROH8Q9H579 483 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 SLC5A4Q9NY91 659 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 TMX2Q9Y320 296 aa15.51■□□□□ 0.07
PTCH1-218ENST00000548945 COL11A1P12107 1806 aaPredicted RBP15.51■□□□□ 0.07
PTCH1-218ENST00000548945 SMCHD1A6NHR9 2005 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 CYP2D6P10635 497 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 CNGA1P29973 690 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 CYP2C19P33261 490 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 AMOTL1Q8IY63 956 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 SLC44A5Q8NCS7 719 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 HAUS7Q99871 368 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 SENP6Q9GZR1 1112 aaPredicted RBP15.5■□□□□ 0.07
PTCH1-218ENST00000548945 ARMT1Q9H993 441 aa15.5■□□□□ 0.07
PTCH1-218ENST00000548945 PLXNA1Q9UIW2 1896 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 WDR46O15213 610 aaKnown RBP15.49■□□□□ 0.07
PTCH1-218ENST00000548945 MBD4O95243 580 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 ERCC3P19447 782 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 ICA1Q05084 483 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 UBE3CQ15386 1083 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 KIAA1755Q5JYT7 1200 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 C12orf60Q5U649 245 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 SIAH1Q8IUQ4 282 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 DEFB123Q8N688 67 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 ARRDC4Q8NCT1 418 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 SLC17A8Q8NDX2 589 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 TRPV1Q8NER1 839 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 DYNLL2Q96FJ2 89 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 DDRGK1Q96HY6 314 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 BOLA2Q9H3K6 86 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 VCPKMTQ9H867 229 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 COG6Q9Y2V7 657 aa15.49■□□□□ 0.07
PTCH1-218ENST00000548945 SEPT4O43236 478 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 PRKAB2O43741 272 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 FLOT1O75955 427 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 AKR1B1P15121 316 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 ZSCAN25Q6NSZ9 544 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 C16orf86Q6ZW13 317 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 UNC80Q8N2C7 3258 aa15.48■□□□□ 0.07
PTCH1-218ENST00000548945 LTBP2Q14767 1821 aa15.47■□□□□ 0.07
PTCH1-218ENST00000548945 GREB1LQ9C091 1923 aaPredicted RBP15.47■□□□□ 0.07
PTCH1-218ENST00000548945 COBLO75128 1261 aa15.47■□□□□ 0.07
PTCH1-218ENST00000548945 SLC25A27O95847 323 aa15.47■□□□□ 0.07
PTCH1-218ENST00000548945 CDK8P49336 464 aa15.47■□□□□ 0.07
PTCH1-218ENST00000548945 KANSL2Q9H9L4 492 aa15.47■□□□□ 0.07
PTCH1-218ENST00000548945 ADAMTS5Q9UNA0 930 aa15.47■□□□□ 0.07
PTCH1-218ENST00000548945 USP17L12C9JPN9 530 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 USP17L21D6R901 530 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 FCER1AP12319 257 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 MDM2Q00987 491 aaPredicted RBP15.46■□□□□ 0.07
PTCH1-218ENST00000548945 PLS1Q14651 629 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 NCAPG2Q86XI2 1143 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 SPICE1Q8N0Z3 855 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 ATG4CQ96DT6 458 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 LBHD1Q9BQE6 289 aaPredicted RBP15.46■□□□□ 0.07
PTCH1-218ENST00000548945 MTMR10Q9NXD2 777 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 PRKAG2Q9UGJ0 569 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 NRBP1Q9UHY1 535 aa15.46■□□□□ 0.07
PTCH1-218ENST00000548945 STXBP5LQ9Y2K9 1186 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms