RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 PAGR1Q9BTK6 254 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.69■□□□□ 0.58
CCDC78-216ENST00000544996 HOXC10Q9NYD6 342 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 RBPJLQ9UBG7 517 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 RABGAP1Q9Y3P9 1069 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 FGAP02671 866 aa18.68■□□□□ 0.58
CCDC78-216ENST00000544996 SPICE1Q8N0Z3 855 aa18.68■□□□□ 0.58
CCDC78-216ENST00000544996 TXNRD2Q9NNW7 524 aa18.68■□□□□ 0.58
CCDC78-216ENST00000544996 NYAP2Q9P242 653 aa18.68■□□□□ 0.58
CCDC78-216ENST00000544996 ANAPC4Q9UJX5 808 aa18.68■□□□□ 0.58
CCDC78-216ENST00000544996 WDR46O15213 610 aaKnown RBP18.67■□□□□ 0.58
CCDC78-216ENST00000544996 RAD21O60216 631 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 FLT3LGP49771 235 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 RGS19P49795 217 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 ERVK-9P63128 1117 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 ERVK-24P63145 666 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 CCNA1P78396 465 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 CTDSPL2Q05D32 466 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 LBX2Q6XYB7 198 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 ZNF333Q96JL9 665 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 GABRQQ9UN88 632 aa18.67■□□□□ 0.58
CCDC78-216ENST00000544996 FLOT1O75955 427 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 MAPK4P31152 587 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 GRK4P32298 578 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 TFAP4Q01664 338 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 KIAA1755Q5JYT7 1200 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 PPP4R3BQ5MIZ7 849 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 SLAIN1Q8ND83 568 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 NEDD1Q8NHV4 660 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 SH3TC2Q8TF17 1288 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 TMEM106CQ9BVX2 250 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 CWC22Q9HCG8 908 aaKnown RBP18.66■□□□□ 0.58
CCDC78-216ENST00000544996 BIN2Q9UBW5 565 aaPredicted RBP18.66■□□□□ 0.58
CCDC78-216ENST00000544996 CLIP2Q9UDT6 1046 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 ZMYM6O95789 1325 aa18.66■□□□□ 0.58
CCDC78-216ENST00000544996 MYH8P13535 1937 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 IGKV6D-41A0A0C4DH26 115 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 TSPY2A6NKD2 308 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 SPDYE16A6NNV3 312 aaPredicted RBP18.65■□□□□ 0.58
CCDC78-216ENST00000544996 PEX10O60683 326 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 TTLL1O95922 423 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 GSPT1P15170 499 aaKnown RBP18.65■□□□□ 0.58
CCDC78-216ENST00000544996 IRF5Q13568 498 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 Q3C1V9 767 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 FAM47AQ5JRC9 791 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 CENPQQ7L2Z9 268 aaPredicted RBP18.65■□□□□ 0.58
CCDC78-216ENST00000544996 CEP95Q96GE4 821 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 TOMM22Q9NS69 142 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 MTMR4Q9NYA4 1195 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 SYNPO2Q9UMS6 1093 aa18.65■□□□□ 0.58
CCDC78-216ENST00000544996 ADCY3O60266 1144 aa18.64■□□□□ 0.57
CCDC78-216ENST00000544996 RANBP6O60518 1105 aaKnown RBP18.64■□□□□ 0.57
CCDC78-216ENST00000544996 MLLT1Q03111 559 aaPredicted RBP18.64■□□□□ 0.57
CCDC78-216ENST00000544996 MB21D1Q8N884 522 aa18.64■□□□□ 0.57
CCDC78-216ENST00000544996 MKL1Q969V6 931 aa18.64■□□□□ 0.57
CCDC78-216ENST00000544996 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.64■□□□□ 0.57
CCDC78-216ENST00000544996 ZSWIM8A7E2V4 1837 aa18.64■□□□□ 0.57
CCDC78-216ENST00000544996 PLIN4Q96Q06 1357 aa18.64■□□□□ 0.57
CCDC78-216ENST00000544996 F5H6K3 240 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 MYCP01106 439 aaPredicted RBP18.63■□□□□ 0.57
CCDC78-216ENST00000544996 NEFLP07196 543 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 UBXN2AP68543 259 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 KLRC3Q07444 240 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 POTEEQ6S8J3 1075 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 PXYLP1Q8TE99 480 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 RUFY2Q8WXA3 655 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 SOCS4Q8WXH5 440 aa18.63■□□□□ 0.57
CCDC78-216ENST00000544996 ORC4O43929 436 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 CNMDO75829 334 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 FGRP09769 529 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 PCP11498 1178 aaKnown RBP18.62■□□□□ 0.57
CCDC78-216ENST00000544996 DSG3P32926 999 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 WDR78Q5VTH9 848 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 SAMD1Q6SPF0 538 aaPredicted RBP18.62■□□□□ 0.57
CCDC78-216ENST00000544996 MFSD6Q6ZSS7 791 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 PLEKHH3Q7Z736 793 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 NUDT12Q9BQG2 462 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 DSCC1Q9BVC3 393 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 PORCNQ9H237 461 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 RNF41Q9H4P4 317 aaPredicted RBP18.62■□□□□ 0.57
CCDC78-216ENST00000544996 INCENPQ9NQS7 918 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 BTBD7Q9P203 1132 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 GJD2Q9UKL4 321 aa18.62■□□□□ 0.57
CCDC78-216ENST00000544996 ZNF213O14771 459 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 NDUFB10O96000 172 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 HAND2P61296 217 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 RRP12Q5JTH9 1297 aaKnown RBP18.61■□□□□ 0.57
CCDC78-216ENST00000544996 FAM83BQ5T0W9 1011 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 GPR142Q7Z601 462 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 CTNNA3Q9UI47 895 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 STX8Q9UNK0 236 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 IVNS1ABPQ9Y6Y0 642 aa18.61■□□□□ 0.57
CCDC78-216ENST00000544996 RAD50Q92878 1312 aa18.6■□□□□ 0.57
CCDC78-216ENST00000544996 ELNP15502 786 aa18.6■□□□□ 0.57
CCDC78-216ENST00000544996 PLS1Q14651 629 aa18.6■□□□□ 0.57
CCDC78-216ENST00000544996 AKNAD1Q5T1N1 836 aa18.6■□□□□ 0.57
CCDC78-216ENST00000544996 LRRC47Q8N1G4 583 aaKnown RBP18.6■□□□□ 0.57
CCDC78-216ENST00000544996 GMCL1P1Q8NEA9 526 aa18.6■□□□□ 0.57
CCDC78-216ENST00000544996 ATG4CQ96DT6 458 aa18.6■□□□□ 0.57
CCDC78-216ENST00000544996 CCDC136Q96JN2 1154 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms