RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 TNIP1Q15025 636 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 ALX1Q15699 326 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 VPS36Q86VN1 386 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 TGFBRAP1Q8WUH2 860 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 RIPOR2Q9Y4F9 1068 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 CSF1RP07333 972 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 SCARF1Q14162 830 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 TMTC1Q8IUR5 882 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 SYNE4Q8N205 404 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 CARD6Q9BX69 1037 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 TAB2Q9NYJ8 693 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 SRPRBQ9Y5M8 271 aaKnown RBP6.5□□□□□ -1.37
VPS50-220ENST00000544910 PHLPP2Q6ZVD8 1323 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 GTPBP6O43824 516 aaPredicted RBP6.5□□□□□ -1.37
VPS50-220ENST00000544910 NONOQ15233 471 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS50-220ENST00000544910 SPATA1Q5VX52 437 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 GALNT17Q6IS24 598 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 CCDC91Q7Z6B0 441 aa6.5□□□□□ -1.37
VPS50-220ENST00000544910 CTDNEP1O95476 244 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 CDC27P30260 824 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 TNNI2P48788 182 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 LMAN1P49257 510 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 GABPB1Q06547 395 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 NKX1-1Q15270 411 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 ZNF827Q17R98 1081 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 CABP7Q86V35 215 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 VSTM4Q8IW00 320 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 NOC4LQ9BVI4 516 aaKnown RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 NUP58Q9BVL2 599 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 AFDNP55196 1824 aaKnown RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 KCNJ18B7U540 433 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 TACC1O75410 805 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 LONP1P36776 959 aaKnown RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 RCAN1P53805 252 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 KCNJ12Q14500 433 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 ZNF804BA4D1E1 1349 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 NEFHP12036 1026 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 ERCC5P28715 1186 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 TRAPPC10P48553 1259 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 ADCY7P51828 1080 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 LONRF3Q496Y0 759 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 MAPKAPK5Q8IW41 473 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 IPO4Q8TEX9 1081 aaKnown RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 RASSF4Q9H2L5 321 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 ATP8A2Q9NTI2 1148 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 BSDC1Q9NW68 430 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 PCDHA4Q9UN74 947 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 PCDHA5Q9Y5H7 936 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 SOS2Q07890 1332 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 KDM3BQ7LBC6 1761 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 TBCAO75347 108 aaKnown RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 CHMP4BP1P59074 171 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 CCDC144BQ3MJ40 725 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 NEK11Q8NG66 645 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 TRERF1Q96PN7 1200 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 BRIP1Q9BX63 1249 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 GJB4Q9NTQ9 266 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 PCDHB6Q9Y5E3 794 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 CACNA1FO60840 1977 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 UBN2Q6ZU65 1347 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 RIMBP2O15034 1052 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 AKR1B10O60218 316 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 RPN1P04843 607 aaKnown RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 ST3GAL1Q11201 340 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 KIF5AQ12840 1032 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 TTC31Q49AM3 519 aaPredicted RBP6.49□□□□□ -1.37
VPS50-220ENST00000544910 HDXQ7Z353 690 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 CSGALNACT2Q8N6G5 542 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 GPKOWQ92917 476 aaPredicted RBP eCLIP6.49□□□□□ -1.37
VPS50-220ENST00000544910 MAPK8IP1Q9UQF2 711 aa6.49□□□□□ -1.37
VPS50-220ENST00000544910 ENOX2Q16206 610 aaKnown RBP6.48□□□□□ -1.37
VPS50-220ENST00000544910 IFI16Q16666 785 aaKnown RBP6.48□□□□□ -1.37
VPS50-220ENST00000544910 CCDC122Q5T0U0 273 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 STXBP4Q6ZWJ1 553 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 CCDC24Q8N4L8 307 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 JAKMIP2Q96AA8 810 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 CCDC42Q96M95 316 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 MMRN2Q9H8L6 949 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 GPCPD1Q9NPB8 672 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS50-220ENST00000544910 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.48□□□□□ -1.37
VPS50-220ENST00000544910 ZNF215Q9UL58 517 aaPredicted RBP6.48□□□□□ -1.37
VPS50-220ENST00000544910 PNPLA7Q6ZV29 1317 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 A0A0G2JLW4 131 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 STX10O60499 249 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 PTGDRQ13258 359 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 NR5A1Q13285 461 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 ZNF579Q8NAF0 562 aaKnown RBP6.48□□□□□ -1.37
VPS50-220ENST00000544910 ZNF622Q969S3 477 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS50-220ENST00000544910 CAPZA3Q96KX2 299 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 GSDMAQ96QA5 445 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 RHOXF2BP0C7M4 288 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 ANTXR2P58335 489 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 GOLGA8FQ08AF8 430 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 GOLGA8DPQ0D2H9 430 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 CALCRLQ16602 461 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 SGMS1Q86VZ5 419 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 GRAMD1CQ8IYS0 662 aa6.48□□□□□ -1.37
VPS50-220ENST00000544910 STAMQ92783 540 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms