RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ACTN4O43707 911 aaKnown RBP11.27□□□□□ -0.61
SS18-205ENST00000542420 SERPINB2P05120 415 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 USP5P45974 858 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 MORC3Q14149 939 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 NPY5RQ15761 445 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 LONRF3Q496Y0 759 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 ZNF713Q8N859 430 aaPredicted RBP11.27□□□□□ -0.61
SS18-205ENST00000542420 RTFDC1Q9BY42 306 aaPredicted RBP11.27□□□□□ -0.61
SS18-205ENST00000542420 CD209Q9NNX6 404 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 CABP5Q9NP86 173 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 PCDHB6Q9Y5E3 794 aa11.27□□□□□ -0.61
SS18-205ENST00000542420 V9GY48 417 aaPredicted RBP11.27□□□□□ -0.61
SS18-205ENST00000542420 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.26□□□□□ -0.61
SS18-205ENST00000542420 LAD1O00515 517 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 PLEKHA8P1O95397 391 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 KCNQ4P56696 695 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 NR5A1Q13285 461 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 CCDC144BQ3MJ40 725 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 TTC38Q5R3I4 469 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 C16orf86Q6ZW13 317 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 TXNRD3Q86VQ6 643 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 SRBD1Q8N5C6 995 aaKnown RBP11.26□□□□□ -0.61
SS18-205ENST00000542420 IPO4Q8TEX9 1081 aaKnown RBP11.26□□□□□ -0.61
SS18-205ENST00000542420 SMARCE1Q969G3 411 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 CLIC6Q96NY7 704 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 CYP2D7A0A087X1C5 515 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 PSDA5PKW4 1024 aaPredicted RBP11.26□□□□□ -0.61
SS18-205ENST00000542420 WTIPA6NIX2 430 aaPredicted RBP11.26□□□□□ -0.61
SS18-205ENST00000542420 SLFN14P0C7P3 912 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 FANCCQ00597 558 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 AMIGO3Q86WK7 504 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 FCHSD1Q86WN1 690 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 SP8Q8IXZ3 490 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 GSDMAQ96QA5 445 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 VPS54Q9P1Q0 977 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 PCDHA5Q9Y5H7 936 aa11.26□□□□□ -0.61
SS18-205ENST00000542420 KIF20AO95235 890 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 GPSM2P81274 684 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 CCZ1BP86790 482 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 CCZ1P86791 482 aaPredicted RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 OXER1Q8TDS5 423 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 CCDC12Q8WUD4 166 aaPredicted RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 SPZ1Q9BXG8 430 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 GTPBP4Q9BZE4 634 aaKnown RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 LRRC4BQ9NT99 713 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 NRBP1Q9UHY1 535 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 MAN1B1Q9UKM7 699 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 MYL1P05976 194 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 HOXA7P31268 230 aaPredicted RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 LONP1P36776 959 aaKnown RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 TFAP4Q01664 338 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 PNOCQ13519 176 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 ZNF444Q8N0Y2 327 aaPredicted RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 PNMA1Q8ND90 353 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 FLAD1Q8NFF5 587 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 NEDD1Q8NHV4 660 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 SHISA4Q96DD7 197 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 XPO4Q9C0E2 1151 aaKnown RBP11.25□□□□□ -0.61
SS18-205ENST00000542420 HSD3B7Q9H2F3 369 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 PCDHA4Q9UN74 947 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 SNED1Q8TER0 1413 aa11.25□□□□□ -0.61
SS18-205ENST00000542420 UBE2Q2LH0YL09 131 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 POLR2DO15514 142 aaKnown RBP11.24□□□□□ -0.61
SS18-205ENST00000542420 UFL1O94874 794 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 PLCD1P51178 756 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 NLRP5P59047 1200 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 SH3RF3Q8TEJ3 882 aaPredicted RBP11.24□□□□□ -0.61
SS18-205ENST00000542420 COA1Q9GZY4 146 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 CSRNP2Q9H175 543 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 MKNK2Q9HBH9 465 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 IFNKQ9P0W0 207 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 SERTAD1Q9UHV2 236 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 ZNF646O15015 1829 aaPredicted RBP11.24□□□□□ -0.61
SS18-205ENST00000542420 PALM3A6NDB9 673 aaPredicted RBP11.24□□□□□ -0.61
SS18-205ENST00000542420 POLRMTO00411 1230 aaKnown RBP11.24□□□□□ -0.61
SS18-205ENST00000542420 PRDM1O75626 825 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 TSPY3P0CV98 308 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 TSPY8P0CW00 308 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 SKILP12757 684 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 ZNF18P17022 549 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 PRPHP41219 470 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 BLIDQ8IZY5 108 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 MAGEF1Q9HAY2 307 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 IL17RBQ9NRM6 502 aa11.24□□□□□ -0.61
SS18-205ENST00000542420 ESYT2A0FGR8 921 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 M0R2N6 131 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 USP17L8P0C7I0 530 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 CYP2D6P10635 497 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 SFPQP23246 707 aaKnown RBP eCLIP11.23□□□□□ -0.61
SS18-205ENST00000542420 NYAP1Q6ZVC0 841 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 FOXP4Q8IVH2 680 aaPredicted RBP11.23□□□□□ -0.61
SS18-205ENST00000542420 VSTM4Q8IW00 320 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 MAD2L2Q9UI95 211 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 COL11A2P13942 1736 aaPredicted RBP11.23□□□□□ -0.61
SS18-205ENST00000542420 BIN1O00499 593 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 CTIFO43310 598 aaKnown RBP11.23□□□□□ -0.61
SS18-205ENST00000542420 RASA1P20936 1047 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 TXLNAP40222 546 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 BTDP43251 543 aa11.23□□□□□ -0.61
SS18-205ENST00000542420 UBASH3AP57075 661 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms