RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 GJC2Q5T442 439 aaPredicted RBP14.86□□□□□ -0.03
SNHG1-216ENST00000541416 ITPRIPQ8IWB1 547 aa14.86□□□□□ -0.03
SNHG1-216ENST00000541416 ABRAQ8N0Z2 381 aa14.86□□□□□ -0.03
SNHG1-216ENST00000541416 EAF2Q96CJ1 260 aaPredicted RBP14.86□□□□□ -0.03
SNHG1-216ENST00000541416 GUCD1Q96NT3 240 aa14.86□□□□□ -0.03
SNHG1-216ENST00000541416 MOV10L1Q9BXT6 1211 aaKnown RBP14.86□□□□□ -0.03
SNHG1-216ENST00000541416 PRDM5Q9NQX1 630 aaPredicted RBP14.86□□□□□ -0.03
SNHG1-216ENST00000541416 TLR7Q9NYK1 1049 aaKnown RBP14.86□□□□□ -0.03
SNHG1-216ENST00000541416 TNNQ9UQP3 1299 aa14.86□□□□□ -0.03
SNHG1-216ENST00000541416 ZNF236Q9UL36 1845 aa14.86□□□□□ -0.03
SNHG1-216ENST00000541416 MYCNP04198 464 aaPredicted RBP14.85□□□□□ -0.03
SNHG1-216ENST00000541416 PLCD1P51178 756 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 PLS1Q14651 629 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 SLC39A5Q6ZMH5 540 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 TMEM179Q6ZVK1 233 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 FAM161BQ96MY7 647 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 COL25A1Q9BXS0 654 aaPredicted RBP14.85□□□□□ -0.03
SNHG1-216ENST00000541416 ARHGEF10LQ9HCE6 1279 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 MCM9Q9NXL9 1143 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 SWAP70Q9UH65 585 aa14.85□□□□□ -0.03
SNHG1-216ENST00000541416 FCER1AP12319 257 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 ERCC3P19447 782 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 SLC9C2Q5TAH2 1124 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 AACSQ86V21 672 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 NCAPG2Q86XI2 1143 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 AMOTL1Q8IY63 956 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 TRPV1Q8NER1 839 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 RIOK1Q9BRS2 568 aaKnown RBP14.84□□□□□ -0.03
SNHG1-216ENST00000541416 C1orf115Q9H7X2 142 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 NRBP1Q9UHY1 535 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 PRUNE2Q8WUY3 3088 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 NAV1Q8NEY1 1877 aa14.84□□□□□ -0.03
SNHG1-216ENST00000541416 FLOT1O75955 427 aa14.83□□□□□ -0.04
SNHG1-216ENST00000541416 SLC25A27O95847 323 aa14.83□□□□□ -0.04
SNHG1-216ENST00000541416 GUCY1A2P33402 732 aa14.83□□□□□ -0.04
SNHG1-216ENST00000541416 SMAD3P84022 425 aaKnown RBP14.83□□□□□ -0.04
SNHG1-216ENST00000541416 GABPAQ06546 454 aa14.83□□□□□ -0.04
SNHG1-216ENST00000541416 C1orf53Q5VUE5 145 aa14.83□□□□□ -0.04
SNHG1-216ENST00000541416 ANTXR1Q9H6X2 564 aa14.83□□□□□ -0.04
SNHG1-216ENST00000541416 LTBP2Q14767 1821 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 RLFQ13129 1914 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 IGHA2P01877 340 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 RARBP10826 455 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 DSG3P32926 999 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 ADCYAP1R1P41586 468 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 SNX17Q15036 470 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 SHHQ15465 462 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 ANO1Q5XXA6 986 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 BADQ92934 168 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 DDRGK1Q96HY6 314 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 TACC3Q9Y6A5 838 aa14.82□□□□□ -0.04
SNHG1-216ENST00000541416 A0A1W2PRG0 241 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 WDR46O15213 610 aaKnown RBP14.81□□□□□ -0.04
SNHG1-216ENST00000541416 PDE6AP16499 860 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 ICA1Q05084 483 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 LRRC41Q15345 812 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 TRIM60Q495X7 471 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 RNF180Q86T96 592 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 CLASRPQ8N2M8 674 aaKnown RBP14.81□□□□□ -0.04
SNHG1-216ENST00000541416 MAFAQ8NHW3 353 aaPredicted RBP14.81□□□□□ -0.04
SNHG1-216ENST00000541416 MAML3Q96JK9 1138 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 CCDC17Q96LX7 622 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 CDX2Q99626 313 aaPredicted RBP14.81□□□□□ -0.04
SNHG1-216ENST00000541416 SEMA6BQ9H3T3 888 aa14.81□□□□□ -0.04
SNHG1-216ENST00000541416 TMEM265A0A087WTH1 108 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 COBLO75128 1261 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 COPB2P35606 906 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 KCTD2Q14681 263 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 CEP85Q6P2H3 762 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 VCPKMTQ9H867 229 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 DCP1AQ9NPI6 582 aaPredicted RBP14.8□□□□□ -0.04
SNHG1-216ENST00000541416 XPNPEP3Q9NQH7 507 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 PDLIM7Q9NR12 457 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 EXOC6BQ9Y2D4 811 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 TMX2Q9Y320 296 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 ZNF532Q9HCE3 1301 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 A0A0G2JMZ2 1700 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 MYH8P13535 1937 aa14.8□□□□□ -0.04
SNHG1-216ENST00000541416 VCANP13611 3396 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 CLTBP09497 229 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 IFIT2P09913 472 aaKnown RBP14.79□□□□□ -0.04
SNHG1-216ENST00000541416 FAM47AQ5JRC9 791 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 SAMD1Q6SPF0 538 aaPredicted RBP14.79□□□□□ -0.04
SNHG1-216ENST00000541416 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.79□□□□□ -0.04
SNHG1-216ENST00000541416 SDR42E1Q8WUS8 393 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 SYMPKQ92797 1274 aaKnown RBP14.79□□□□□ -0.04
SNHG1-216ENST00000541416 FERMT2Q96AC1 680 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 ATG4CQ96DT6 458 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 MMP19Q99542 508 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.79□□□□□ -0.04
SNHG1-216ENST00000541416 ATP8A2Q9NTI2 1148 aa14.79□□□□□ -0.04
SNHG1-216ENST00000541416 DIS3Q9Y2L1 958 aaKnown RBP14.79□□□□□ -0.04
SNHG1-216ENST00000541416 GOLIM4O00461 696 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 RAG1P15918 1043 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 TLE2Q04725 743 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 PRAMEF19Q5SWL8 479 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 C9orf50Q5SZB4 431 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 SPICE1Q8N0Z3 855 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 KIF1BPQ96EK5 621 aa14.78□□□□□ -0.04
SNHG1-216ENST00000541416 RNPC3Q96LT9 517 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms