RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 IRF5Q13568 498 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 Q3C1V9 767 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 NAPBQ9H115 298 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 ARHGEF10LQ9HCE6 1279 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 ANAPC4Q9UJX5 808 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 GJD2Q9UKL4 321 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP28-209ENST00000540925 TACC3Q9Y6A5 838 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 ZMYM6O95789 1325 aa16.94■□□□□ 0.3
USP28-209ENST00000540925 PARP14Q460N5 1801 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 SPDYE16A6NNV3 312 aaPredicted RBP16.93■□□□□ 0.3
USP28-209ENST00000540925 TRIM6-TRIM34B2RNG4 842 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 FLT3LGP49771 235 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 ERVK-9P63128 1117 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 ERVK-24P63145 666 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 PPARAQ07869 468 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 NBPF11Q86T75 865 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 GPRC5AQ8NFJ5 357 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 SH3TC2Q8TF17 1288 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 SH2D4AQ9H788 454 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 MKNK2Q9HBH9 465 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 RABGAP1Q9Y3P9 1069 aa16.93■□□□□ 0.3
USP28-209ENST00000540925 KIAA0100Q14667 2235 aaKnown RBP16.93■□□□□ 0.3
USP28-209ENST00000540925 POTEFA5A3E0 1075 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 PRDM1O75626 825 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 FGRP09769 529 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 HSPD1P10809 573 aaKnown RBP16.92■□□□□ 0.3
USP28-209ENST00000540925 GSPT1P15170 499 aaKnown RBP16.92■□□□□ 0.3
USP28-209ENST00000540925 RAET1EQ8TD07 263 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 PXYLP1Q8TE99 480 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 RILPL2Q969X0 211 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 NYAP2Q9P242 653 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 CCDC171Q6TFL3 1326 aa16.92■□□□□ 0.3
USP28-209ENST00000540925 WDR46O15213 610 aaKnown RBP16.91■□□□□ 0.3
USP28-209ENST00000540925 FGAP02671 866 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 GRK4P32298 578 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 COG2Q14746 738 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 STK11IPQ8N1F8 1099 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 SLAIN1Q8ND83 568 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 NEDD1Q8NHV4 660 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 USP6NLQ92738 828 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 MKL1Q969V6 931 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 COA7Q96BR5 231 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 PORCNQ9H237 461 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 ZNF287Q9HBT7 754 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 BTBD7Q9P203 1132 aa16.91■□□□□ 0.3
USP28-209ENST00000540925 MAPK4P31152 587 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 PDE4BQ07343 736 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 TTC22Q5TAA0 569 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 PRPF38BQ5VTL8 546 aaKnown RBP16.9■□□□□ 0.3
USP28-209ENST00000540925 SPICE1Q8N0Z3 855 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 MTMR4Q9NYA4 1195 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 SYNPO2Q9UMS6 1093 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 ADAMTS5Q9UNA0 930 aa16.9■□□□□ 0.3
USP28-209ENST00000540925 ADCY3O60266 1144 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 NOVP48745 357 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 CTDSPL2Q05D32 466 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 MTFR1Q15390 333 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 ZNF444Q8N0Y2 327 aaPredicted RBP16.89■□□□□ 0.29
USP28-209ENST00000540925 CEP95Q96GE4 821 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 PAGR1Q9BTK6 254 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 HOXC10Q9NYD6 342 aa16.89■□□□□ 0.29
USP28-209ENST00000540925 ORC4O43929 436 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 SLC3A2P08195 630 aaKnown RBP16.88■□□□□ 0.29
USP28-209ENST00000540925 ELNP15502 786 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 DSG3P32926 999 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 MORN1Q5T089 497 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 TANGO6Q9C0B7 1094 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 NBPF3Q9H094 633 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 GOPCQ9HD26 462 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 INCENPQ9NQS7 918 aa16.88■□□□□ 0.29
USP28-209ENST00000540925 HIP1O00291 1037 aa16.87■□□□□ 0.29
USP28-209ENST00000540925 FAM47AQ5JRC9 791 aa16.87■□□□□ 0.29
USP28-209ENST00000540925 GPR142Q7Z601 462 aa16.87■□□□□ 0.29
USP28-209ENST00000540925 MB21D1Q8N884 522 aa16.87■□□□□ 0.29
USP28-209ENST00000540925 IL25Q9H293 177 aa16.87■□□□□ 0.29
USP28-209ENST00000540925 MYH4Q9Y623 1939 aa16.87■□□□□ 0.29
USP28-209ENST00000540925 F5H6K3 240 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 FLOT1O75955 427 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 TTLL1O95922 423 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 NDUFB10O96000 172 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 XRCC5P13010 732 aaKnown RBP16.86■□□□□ 0.29
USP28-209ENST00000540925 EN2P19622 333 aaPredicted RBP16.86■□□□□ 0.29
USP28-209ENST00000540925 MFAP1P55081 439 aaKnown RBP16.86■□□□□ 0.29
USP28-209ENST00000540925 CCNA1P78396 465 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 TFAP4Q01664 338 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 ATP2B2Q01814 1243 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 KLRC3Q07444 240 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 CWC27Q6UX04 472 aaKnown RBP16.86■□□□□ 0.29
USP28-209ENST00000540925 PLEKHH3Q7Z736 793 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 GMCL1P1Q8NEA9 526 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 SOCS4Q8WXH5 440 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 ATG4CQ96DT6 458 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 IL17RBQ9NRM6 502 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 FBXO28Q9NVF7 368 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 CLIP2Q9UDT6 1046 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 LAMA4Q16363 1823 aa16.86■□□□□ 0.29
USP28-209ENST00000540925 ZNF236Q9UL36 1845 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 IGHA2P01877 340 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 INHAP05111 366 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms