RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	C2orf54	Q08AI8	447 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	TYW1B	Q6NUM6	668 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	TRMT44	Q8IYL2	757 aa	Known RBP	9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	SEPT10	Q9P0V9	454 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	TBCA	O75347	108 aa	Known RBP	9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	SUPT3H	O75486	399 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	PDE5A	O76074	875 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	HEXIM1	O94992	359 aa	Known RBP	9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	PARP1	P09874	1014 aa	Known RBP	9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	PPP1R2	P41236	205 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	MLEC	Q14165	292 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	ARHGEF18	Q6ZSZ5	1173 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	CCDC89	Q8N998	374 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	LRP2BP	Q9P2M1	347 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	EPS15L1	Q9UBC2	864 aa		9.63	□□□□□ -0.87
YBX3-208	ENST00000540447	GIPC1	O14908	333 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SERPINB4	P48594	390 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	GEN1	Q17RS7	908 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	USP37	Q86T82	979 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	HOOK2	Q96ED9	719 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	MYO1F	O00160	1098 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	WDR46	O15213	610 aa	Known RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	KCNA3	P22001	575 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	TRPC1	P48995	793 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SEMA3F	Q13275	785 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	LONP2	Q86WA8	852 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	LRGUK	Q96M69	825 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	POLK	Q9UBT6	870 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	ZNF229	Q9UJW7	825 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	TNN	Q9UQP3	1299 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	ESRRA	P11474	423 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	CPA1	P15085	419 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	RAP1GDS1	P52306	607 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	RHPN1	Q8TCX5	695 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	CEP19	Q96LK0	163 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	NUDCD1	Q96RS6	583 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SIKE1	Q9BRV8	207 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SPINK5	Q9NQ38	1064 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	CCDC141	Q6ZP82	1450 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	ADCY3	O60266	1144 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	TTC16	Q8NEE8	873 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SDCCAG3	Q96C92	435 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	THAP12	O43422	761 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	ESRRB	O95718	433 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	BEND6	Q5SZJ8	279 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	EMB	Q6PCB8	327 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	HEATR3	Q7Z4Q2	680 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	CCT6B	Q92526	530 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	PPWD1	Q96BP3	646 aa	Known RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	GPR101	Q96P66	508 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	C10orf88	Q9H8K7	445 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SCHIP1	Q9P0W5	487 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	SSX2IP	Q9Y2D8	614 aa		9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	EPN1	Q9Y6I3	576 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-208	ENST00000540447	TNFAIP3	P21580	790 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	CSGALNACT2	Q8N6G5	542 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	LZIC	Q8WZA0	190 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	DCTPP1	Q9H773	170 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	IFT122	Q9HBG6	1241 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	ITGB1BP2	Q9UKP3	347 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	TRPC5	Q9UL62	973 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	PABPN1L	A6NDY0	278 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	POLR2D	O15514	142 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	DCTN3	O75935	186 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	POSTN	Q15063	836 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	PARVB	Q9HBI1	364 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	FGFR1OP2	Q9NVK5	253 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	ATP11B	Q9Y2G3	1177 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	NBPF26	B4DH59	902 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	CUTA	O60888	179 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	TRIM60	Q495X7	471 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	SUGP1	Q8IWZ8	645 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	NBPF15	Q8N660	670 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	RUNDC3B	Q96NL0	473 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	SH3GL1	Q99961	368 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	SLC40A1	Q9NP59	571 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	RGL1	Q9NZL6	768 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	MCM8	Q9UJA3	840 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	CCND1	P24385	295 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	RSBN1L	Q6PCB5	846 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	SKAP2	O75563	359 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	CRCP	O75575	148 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	KRT5	P13647	590 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	LMNB1	P20700	586 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	ARHGAP4	P98171	946 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	STRN3	Q13033	797 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	CHAMP1	Q96JM3	812 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	DLGAP2	Q9P1A6	1054 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	AMFR	Q9UKV5	643 aa		9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	TMA7	Q9Y2S6	64 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-208	ENST00000540447	TTC4	O95801	387 aa		9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	CUL4B	Q13620	913 aa		9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	NUGGC	Q68CJ6	796 aa		9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	FAM43B	Q6ZT52	329 aa	Predicted RBP	9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	SESTD1	Q86VW0	696 aa		9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	EFHD1	Q9BUP0	239 aa		9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	TRAF3IP3	Q9Y228	551 aa		9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	WBP4	O75554	376 aa	Known RBP	9.6	□□□□□ -0.87
YBX3-208	ENST00000540447	MME	P08473	750 aa		9.6	□□□□□ -0.87

Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms