RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 HMGCRP04035 888 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 INHAP05111 366 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 GJB1P08034 283 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 CCL5P13501 91 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 RASA1P20936 1047 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 MTFR1Q15390 333 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 POTEEQ6S8J3 1075 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 CCAR1Q8IX12 1150 aaKnown RBP13.8□□□□□ -0.2
RTN3-209ENST00000538995 MB21D1Q8N884 522 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 SEC62Q99442 399 aaKnown RBP13.8□□□□□ -0.2
RTN3-209ENST00000538995 NUDT12Q9BQG2 462 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 MKNK2Q9HBH9 465 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 HOXC10Q9NYD6 342 aa13.8□□□□□ -0.2
RTN3-209ENST00000538995 CNMDO75829 334 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 MYCP01106 439 aaPredicted RBP13.79□□□□□ -0.2
RTN3-209ENST00000538995 IGHDP01880 384 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 SLC3A2P08195 630 aaKnown RBP13.79□□□□□ -0.2
RTN3-209ENST00000538995 XRCC5P13010 732 aaKnown RBP13.79□□□□□ -0.2
RTN3-209ENST00000538995 EEF2P13639 858 aaKnown RBP13.79□□□□□ -0.2
RTN3-209ENST00000538995 ELNP15502 786 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 GJA8P48165 433 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 COG2Q14746 738 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 GPR142Q7Z601 462 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 CLEC10AQ8IUN9 316 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 TRMT44Q8IYL2 757 aaKnown RBP13.79□□□□□ -0.2
RTN3-209ENST00000538995 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.79□□□□□ -0.2
RTN3-209ENST00000538995 TANGO6Q9C0B7 1094 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 RNF208Q9H0X6 261 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 NAPBQ9H115 298 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 PORCNQ9H237 461 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 OSBPL3Q9H4L5 887 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 GOPCQ9HD26 462 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 HELLSQ9NRZ9 838 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 SYNPO2Q9UMS6 1093 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 PLIN4Q96Q06 1357 aa13.79□□□□□ -0.2
RTN3-209ENST00000538995 MYH8P13535 1937 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 RGS2P41220 211 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 PDE4BQ07343 736 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 Q3C1V9 767 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 MORN1Q5T089 497 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 PRPF38BQ5VTL8 546 aaKnown RBP13.78□□□□□ -0.2
RTN3-209ENST00000538995 PLEKHH3Q7Z736 793 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 USP6NLQ92738 828 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 SHISA4Q96DD7 197 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 NYAP2Q9P242 653 aa13.78□□□□□ -0.2
RTN3-209ENST00000538995 GREB1LQ9C091 1923 aaPredicted RBP13.78□□□□□ -0.2
RTN3-209ENST00000538995 IGKV6D-41A0A0C4DH26 115 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 FOXP2O15409 715 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 PEX10O60683 326 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 FLOT1O75955 427 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 DSG3P32926 999 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 PPARAQ07869 468 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 KIAA1755Q5JYT7 1200 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 B4GALNT3Q6L9W6 998 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 PLEKHM2Q8IWE5 1019 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 ZNF444Q8N0Y2 327 aaPredicted RBP13.77□□□□□ -0.21
RTN3-209ENST00000538995 SPICE1Q8N0Z3 855 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 APBA2Q99767 749 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 UNC93B1Q9H1C4 597 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 CWC22Q9HCG8 908 aaKnown RBP13.77□□□□□ -0.21
RTN3-209ENST00000538995 PAK6Q9NQU5 681 aaPredicted RBP13.77□□□□□ -0.21
RTN3-209ENST00000538995 BTBD7Q9P203 1132 aa13.77□□□□□ -0.21
RTN3-209ENST00000538995 A0A0G2JMZ2 1700 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 ZMYM6O95789 1325 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 SLC15A5A6NIM6 579 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 ATP2B2Q01814 1243 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 ALX1Q15699 326 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 MCMDC2Q4G0Z9 681 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 PPP4R3BQ5MIZ7 849 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 SHCBP1Q8NEM2 672 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 U2AF1L4Q8WU68 220 aaKnown RBP13.76□□□□□ -0.21
RTN3-209ENST00000538995 IVNS1ABPQ9Y6Y0 642 aa13.76□□□□□ -0.21
RTN3-209ENST00000538995 A0A0D9SFI3 127 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 TRIM6-TRIM34B2RNG4 842 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 SGPL1O95470 568 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 ZKSCAN1P17029 563 aaPredicted RBP13.75□□□□□ -0.21
RTN3-209ENST00000538995 CYP2B6P20813 491 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 MAP2K5Q13163 448 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 GRB14Q14449 540 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 MAP3K21Q5TCX8 1036 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 CCDC129Q6ZRS4 1044 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 NEDD1Q8NHV4 660 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 TRIB2Q92519 343 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 SPATC1LQ9H0A9 340 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 MTMR4Q9NYA4 1195 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 ANAPC4Q9UJX5 808 aa13.75□□□□□ -0.21
RTN3-209ENST00000538995 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.75□□□□□ -0.21
RTN3-209ENST00000538995 DOCK3Q8IZD9 2030 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 PLXNB2O15031 1838 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 RPTORQ8N122 1335 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 PRDM1O75626 825 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 SLC34A2O95436 690 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 TTLL1O95922 423 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 HOXC6P09630 235 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 TSPY3P0CV98 308 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 TSPY8P0CW00 308 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 PTPREP23469 700 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 MFAP1P55081 439 aaKnown RBP13.74□□□□□ -0.21
RTN3-209ENST00000538995 UBE2Q1Q7Z7E8 422 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 STK11IPQ8N1F8 1099 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms