RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 CEP126Q9P2H0 1117 aa10.29□□□□□ -0.76
CLIP1-206ENST00000535290 TBX21Q9UL17 535 aa10.29□□□□□ -0.76
CLIP1-206ENST00000535290 SSUH2Q9Y2M2 353 aa10.29□□□□□ -0.76
CLIP1-206ENST00000535290 PRRC2BQ5JSZ5 2229 aaKnown RBP10.29□□□□□ -0.76
CLIP1-206ENST00000535290 SPDYE16A6NNV3 312 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-206ENST00000535290 DCDC2CA8MYV0 355 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 SMIM22K7EJ46 135 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 TLL1O43897 1013 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 PPIGQ13427 754 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLIP1-206ENST00000535290 RAB30Q15771 203 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 LBX2Q6XYB7 198 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 METTL16Q86W50 562 aaKnown RBP10.28□□□□□ -0.76
CLIP1-206ENST00000535290 SH3RF3Q8TEJ3 882 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-206ENST00000535290 HERVK_113Q902F9 699 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 C12orf42Q96LP6 360 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 MOV10L1Q9BXT6 1211 aaKnown RBP10.28□□□□□ -0.76
CLIP1-206ENST00000535290 USP44Q9H0E7 712 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 SLC28A3Q9HAS3 691 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 CD320Q9NPF0 282 aa10.28□□□□□ -0.76
CLIP1-206ENST00000535290 PI4K2BG5E9Z4 385 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 MAP4K4O95819 1239 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 GH2P01242 217 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 RARBP10826 455 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 VCAM1P19320 739 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 DDX10Q13206 875 aaKnown RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 TBC1D9Q6ZT07 1266 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 RNF180Q86T96 592 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 FOXP4Q8IVH2 680 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 LENG1Q96BZ8 264 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 NSUN4Q96CB9 384 aaKnown RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 DHX36Q9H2U1 1008 aaKnown RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 GINM1Q9NU53 330 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 PDS5AQ29RF7 1337 aaKnown RBP10.27□□□□□ -0.77
CLIP1-206ENST00000535290 MYH13Q9UKX3 1938 aa10.27□□□□□ -0.77
CLIP1-206ENST00000535290 XIRP2A4UGR9 3374 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 ATAD5Q96QE3 1844 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 PLXNA1Q9UIW2 1896 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 RFXAPO00287 272 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 STRNO43815 780 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 CIAO1O76071 339 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 LDHCP07864 332 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 MYOGP15173 224 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 TAL1P17542 331 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-206ENST00000535290 ERCC3P19447 782 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 RABGGTBP53611 331 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 TIMM10P62072 90 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 CCDC174Q6PII3 467 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 PI16Q6UXB8 463 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 MAPKAPK5Q8IW41 473 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 CRACR2BQ8N4Y2 399 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-206ENST00000535290 ACER1Q8TDN7 264 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 FEZ1Q99689 392 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 STARD7Q9NQZ5 370 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 PALD1Q9ULE6 856 aa10.26□□□□□ -0.77
CLIP1-206ENST00000535290 CACNA1FO60840 1977 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 CHD7Q9P2D1 2997 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 HAX1O00165 279 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 ADAMTS4O75173 837 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 FXR2P51116 673 aaKnown RBP eCLIP10.25□□□□□ -0.77
CLIP1-206ENST00000535290 ACLYP53396 1101 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 GSTO1P78417 241 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 NHLH1Q02575 133 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 KRT40Q6A162 431 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 PSRC1Q6PGN9 363 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-206ENST00000535290 IFNLR1Q8IU57 520 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-206ENST00000535290 TGFBRAP1Q8WUH2 860 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 MAML3Q96JK9 1138 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 PPP1R12CQ9BZL4 782 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 SPATC1LQ9H0A9 340 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 RPAP3Q9H6T3 665 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-206ENST00000535290 RAI14Q9P0K7 980 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 MTCH2Q9Y6C9 303 aa10.25□□□□□ -0.77
CLIP1-206ENST00000535290 IL15P40933 162 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-206ENST00000535290 PPP2R2DQ66LE6 453 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 TMEM199Q8N511 208 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 TRIM34Q9BYJ4 488 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 KIAA1683Q9H0B3 1180 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 PRKRIP1Q9H875 184 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-206ENST00000535290 SLC5A4Q9NY91 659 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 HMG20BQ9P0W2 317 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 PA2G4Q9UQ80 394 aaKnown RBP10.24□□□□□ -0.77
CLIP1-206ENST00000535290 ZNF521Q96K83 1311 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 SMCHD1A6NHR9 2005 aa10.24□□□□□ -0.77
CLIP1-206ENST00000535290 PRR33A8MZF0 331 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 APBB1O00213 710 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 ZNF865P0CJ78 1059 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-206ENST00000535290 POU3F3P20264 500 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-206ENST00000535290 CYP2C18P33260 490 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 CDK7P50613 346 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 USP14P54578 494 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 IRX5P78411 483 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-206ENST00000535290 RAB3GAP1Q15042 981 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 KCNA10Q16322 511 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 CCSAPQ6IQ19 270 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-206ENST00000535290 OTOP2Q7RTS6 562 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 SHCBP1Q8NEM2 672 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 KLHDC9Q8NEP7 349 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 NUP133Q8WUM0 1156 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 CDCA7LQ96GN5 454 aa10.23□□□□□ -0.77
CLIP1-206ENST00000535290 XAGE2Q96GT9 111 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms