RNA–Protein interactions for RNA: ENST00000533733.5

ATM-222, Transcript of ATM serine/threonine kinase, human

TSL 1 (best)

Gene ATM, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-222	ENST00000533733	PRDM1	O75626	825 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	TXLNA	P40222	546 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	USP5	P45974	858 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	NLRP5	P59047	1200 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	ARID5B	Q14865	1188 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	TMC4	Q7Z404	712 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	SRBD1	Q8N5C6	995 aa	Known RBP	13.62	□□□□□ -0.23
ATM-222	ENST00000533733	IQUB	Q8NA54	791 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	CNBD1	Q8NA66	436 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	DAGLB	Q8NCG7	672 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	CCDC94	Q9BW85	323 aa	Predicted RBP	13.62	□□□□□ -0.23
ATM-222	ENST00000533733	TMX1	Q9H3N1	280 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	FANCL	Q9NW38	375 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	TFCP2L1	Q9NZI6	479 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	ANKIB1	Q9P2G1	1089 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	USP21	Q9UK80	565 aa		13.62	□□□□□ -0.23
ATM-222	ENST00000533733	LAD1	O00515	517 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	MYL1	P05976	194 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	ATP1A3	P13637	1013 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	CDK11B	P21127	795 aa	Known RBP	13.61	□□□□□ -0.23
ATM-222	ENST00000533733	ATP2B4	P23634	1241 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	KLRK1	P26718	216 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	SMARCA1	P28370	1054 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	LONP1	P36776	959 aa	Known RBP	13.61	□□□□□ -0.23
ATM-222	ENST00000533733	PIP4K2B	P78356	416 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	GRM4	Q14833	912 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	NPY5R	Q15761	445 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	RMND1	Q9NWS8	449 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	CGN	Q9P2M7	1197 aa	Known RBP	13.61	□□□□□ -0.23
ATM-222	ENST00000533733	NFE2L3	Q9Y4A8	694 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	BMP6	P22004	513 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	GRIN1	Q05586	938 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	E4F1	Q66K89	784 aa	Predicted RBP	13.61	□□□□□ -0.23
ATM-222	ENST00000533733	ISM2	Q6H9L7	571 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	RCSD1	Q6JBY9	416 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	ZNF710	Q8N1W2	664 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.61	□□□□□ -0.23
ATM-222	ENST00000533733	ERO1A	Q96HE7	468 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	GTPBP4	Q9BZE4	634 aa	Known RBP	13.61	□□□□□ -0.23
ATM-222	ENST00000533733	TAOK2	Q9UL54	1235 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	PHLPP2	Q6ZVD8	1323 aa		13.61	□□□□□ -0.23
ATM-222	ENST00000533733	STX10	O60499	249 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	ST5	P78524	1137 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SPAG1	Q07617	926 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	TBX2	Q13207	712 aa	Predicted RBP	13.6	□□□□□ -0.23
ATM-222	ENST00000533733	ORC2	Q13416	577 aa	Predicted RBP	13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SPECC1	Q5M775	1068 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SPATA1	Q5VX52	437 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SPECC1L	Q69YQ0	1117 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.6	□□□□□ -0.23
ATM-222	ENST00000533733	PNMA1	Q8ND90	353 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	TBC1D22A	Q8WUA7	517 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	UBE2Q2	Q8WVN8	375 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SYMPK	Q92797	1274 aa	Known RBP	13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SHISA4	Q96DD7	197 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	PAGE5	Q96GU1	130 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	PPP1R13B	Q96KQ4	1090 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	SRRT	Q9BXP5	876 aa	Known RBP	13.6	□□□□□ -0.23
ATM-222	ENST00000533733	MKNK2	Q9HBH9	465 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	PCDHA4	Q9UN74	947 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	MYH8	P13535	1937 aa		13.6	□□□□□ -0.23
ATM-222	ENST00000533733	WTIP	A6NIX2	430 aa	Predicted RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	ATP2B1	P20020	1258 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	TFAP4	Q01664	338 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	DPYD	Q12882	1025 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	PTGDR	Q13258	359 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	FILIP1L	Q4L180	1135 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	BLID	Q8IZY5	108 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	RPGR	Q92834	1020 aa	Known RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	DHX58	Q96C10	678 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	RBM17	Q96I25	401 aa	Known RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	FEZ1	Q99689	392 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	NAA15	Q9BXJ9	866 aa	Known RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733		A0A1B0GTH6	734 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	USP27X	A6NNY8	438 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	hCG_1984214	I3L0E3	225 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	FOXN1	O15353	648 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	GTPBP6	O43824	516 aa	Predicted RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	BBOX1	O75936	387 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	SLU7	O95391	586 aa	Known RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	PRR29	P0C7W0	189 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	TSPY3	P0CV98	308 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	TSPY8	P0CW00	308 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	IL1R1	P14778	569 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	NFIX	Q14938	502 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	CRY2	Q49AN0	593 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	FAM47A	Q5JRC9	791 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	PDILT	Q8N807	584 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	ZNF713	Q8N859	430 aa	Predicted RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	FAM163A	Q96GL9	167 aa	Predicted RBP	13.59	□□□□□ -0.23
ATM-222	ENST00000533733	L2HGDH	Q9H9P8	463 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	MAGEF1	Q9HAY2	307 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	PODXL2	Q9NZ53	605 aa		13.59	□□□□□ -0.23
ATM-222	ENST00000533733	QSER1	Q2KHR3	1735 aa		13.58	□□□□□ -0.24
ATM-222	ENST00000533733	ONECUT3	O60422	494 aa	Predicted RBP	13.58	□□□□□ -0.24
ATM-222	ENST00000533733	NR1I3	Q14994	352 aa		13.58	□□□□□ -0.24
ATM-222	ENST00000533733	ZNF592	Q92610	1267 aa		13.58	□□□□□ -0.24
ATM-222	ENST00000533733	SPZ1	Q9BXG8	430 aa		13.58	□□□□□ -0.24
ATM-222	ENST00000533733	CUEDC2	Q9H467	287 aa		13.58	□□□□□ -0.24
ATM-222	ENST00000533733	SUGT1	Q9Y2Z0	365 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms