RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 TMX2Q9Y320 296 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 INHAP05111 366 aa20.58■□□□□ 0.89
PHRF1-204ENST00000532550 EEF2P13639 858 aaKnown RBP20.58■□□□□ 0.89
PHRF1-204ENST00000532550 LBX2Q6XYB7 198 aa20.58■□□□□ 0.89
PHRF1-204ENST00000532550 CLEC10AQ8IUN9 316 aa20.58■□□□□ 0.89
PHRF1-204ENST00000532550 LPAR1Q92633 364 aa20.58■□□□□ 0.89
PHRF1-204ENST00000532550 NUDT12Q9BQG2 462 aa20.58■□□□□ 0.89
PHRF1-204ENST00000532550 TANGO6Q9C0B7 1094 aa20.58■□□□□ 0.89
PHRF1-204ENST00000532550 EPB41L4AQ9HCS5 686 aaPredicted RBP20.58■□□□□ 0.89
PHRF1-204ENST00000532550 GJB1P08034 283 aa20.57■□□□□ 0.88
PHRF1-204ENST00000532550 POTEEQ6S8J3 1075 aa20.57■□□□□ 0.88
PHRF1-204ENST00000532550 CHD1LQ86WJ1 897 aa20.57■□□□□ 0.88
PHRF1-204ENST00000532550 ZNF444Q8N0Y2 327 aaPredicted RBP20.57■□□□□ 0.88
PHRF1-204ENST00000532550 VCPKMTQ9H867 229 aa20.57■□□□□ 0.88
PHRF1-204ENST00000532550 BRCA2P51587 3418 aa20.57■□□□□ 0.88
PHRF1-204ENST00000532550 SPDYE16A6NNV3 312 aaPredicted RBP20.56■□□□□ 0.88
PHRF1-204ENST00000532550 CNMDO75829 334 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 SLC3A2P08195 630 aaKnown RBP20.56■□□□□ 0.88
PHRF1-204ENST00000532550 CYP2B6P20813 491 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 RASA1P20936 1047 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 GPR142Q7Z601 462 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 PLEKHH3Q7Z736 793 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 SPICE1Q8N0Z3 855 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 NAPBQ9H115 298 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 UNC93B1Q9H1C4 597 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 PORCNQ9H237 461 aa20.56■□□□□ 0.88
PHRF1-204ENST00000532550 TRIM6-TRIM34B2RNG4 842 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 GJA8P48165 433 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 NUCB1Q02818 461 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 KIAA1755Q5JYT7 1200 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 WDR78Q5VTH9 848 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 TICAM2Q86XR7 235 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 SOCS4Q8WXH5 440 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 GOPCQ9HD26 462 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 HELLSQ9NRZ9 838 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 BTBD7Q9P203 1132 aa20.55■□□□□ 0.88
PHRF1-204ENST00000532550 RAD21O60216 631 aa20.54■□□□□ 0.88
PHRF1-204ENST00000532550 HMGCRP04035 888 aa20.54■□□□□ 0.88
PHRF1-204ENST00000532550 PDE4BQ07343 736 aa20.54■□□□□ 0.88
PHRF1-204ENST00000532550 ROBO3Q96MS0 1386 aa20.54■□□□□ 0.88
PHRF1-204ENST00000532550 WDR46O15213 610 aaKnown RBP20.53■□□□□ 0.88
PHRF1-204ENST00000532550 PRDM1O75626 825 aa20.53■□□□□ 0.88
PHRF1-204ENST00000532550 FLOT1O75955 427 aa20.53■□□□□ 0.88
PHRF1-204ENST00000532550 SGPL1O95470 568 aa20.53■□□□□ 0.88
PHRF1-204ENST00000532550 XRCC5P13010 732 aaKnown RBP20.53■□□□□ 0.88
PHRF1-204ENST00000532550 DSG3P32926 999 aa20.53■□□□□ 0.88
PHRF1-204ENST00000532550 CCDC129Q6ZRS4 1044 aa20.53■□□□□ 0.88
PHRF1-204ENST00000532550 TRMT44Q8IYL2 757 aaKnown RBP20.53■□□□□ 0.88
PHRF1-204ENST00000532550 U2AF1L4Q8WU68 220 aaKnown RBP20.53■□□□□ 0.88
PHRF1-204ENST00000532550 RILPL2Q969X0 211 aa20.53■□□□□ 0.88
PHRF1-204ENST00000532550 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.53■□□□□ 0.88
PHRF1-204ENST00000532550 CAPN2P17655 700 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 RGS2P41220 211 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 PPARAQ07869 468 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 MORN1Q5T089 497 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 SAMD1Q6SPF0 538 aaPredicted RBP20.52■□□□□ 0.88
PHRF1-204ENST00000532550 PLEKHM2Q8IWE5 1019 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 MB21D1Q8N884 522 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 NYAP2Q9P242 653 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 IVNS1ABPQ9Y6Y0 642 aa20.52■□□□□ 0.88
PHRF1-204ENST00000532550 TFRCP02786 760 aaKnown RBP20.51■□□□□ 0.87
PHRF1-204ENST00000532550 MCMDC2Q4G0Z9 681 aa20.51■□□□□ 0.87
PHRF1-204ENST00000532550 PRPF38BQ5VTL8 546 aaKnown RBP20.51■□□□□ 0.87
PHRF1-204ENST00000532550 USP6NLQ92738 828 aa20.51■□□□□ 0.87
PHRF1-204ENST00000532550 DEFB118Q96PH6 123 aa20.51■□□□□ 0.87
PHRF1-204ENST00000532550 OSBPL3Q9H4L5 887 aa20.51■□□□□ 0.87
PHRF1-204ENST00000532550 HMX1Q9NP08 348 aaPredicted RBP20.51■□□□□ 0.87
PHRF1-204ENST00000532550 CLIP2Q9UDT6 1046 aa20.51■□□□□ 0.87
PHRF1-204ENST00000532550 RPTORQ8N122 1335 aa20.51■□□□□ 0.87
PHRF1-204ENST00000532550 MKI67P46013 3256 aaKnown RBP20.51■□□□□ 0.87
PHRF1-204ENST00000532550 SLC15A5A6NIM6 579 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 TSPY3P0CV98 308 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 TSPY8P0CW00 308 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 PTPREP23469 700 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 PLS1Q14651 629 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 TRIB2Q92519 343 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 SHISA4Q96DD7 197 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 SPATC1LQ9H0A9 340 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 PLXNB2O15031 1838 aa20.5■□□□□ 0.87
PHRF1-204ENST00000532550 ZKSCAN1P17029 563 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-204ENST00000532550 IRX6P78412 446 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-204ENST00000532550 MAP2K5Q13163 448 aa20.49■□□□□ 0.87
PHRF1-204ENST00000532550 ATG4CQ96DT6 458 aa20.49■□□□□ 0.87
PHRF1-204ENST00000532550 FAM227BQ96M60 508 aa20.49■□□□□ 0.87
PHRF1-204ENST00000532550 MOV10L1Q9BXT6 1211 aaKnown RBP20.49■□□□□ 0.87
PHRF1-204ENST00000532550 PAK6Q9NQU5 681 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-204ENST00000532550 F5H6K3 240 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 STRNO43815 780 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 TFAP4Q01664 338 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 KLRC3Q07444 240 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 TRIM32Q13049 653 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 NMIQ13287 307 aaPredicted RBP20.48■□□□□ 0.87
PHRF1-204ENST00000532550 FAM83BQ5T0W9 1011 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 VPS53Q5VIR6 699 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 NEDD1Q8NHV4 660 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 APBA2Q99767 749 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.48■□□□□ 0.872e-6■■□□□ 13.6
PHRF1-204ENST00000532550 MTMR4Q9NYA4 1195 aa20.48■□□□□ 0.87
PHRF1-204ENST00000532550 IGKV6D-41A0A0C4DH26 115 aa20.47■□□□□ 0.87
PHRF1-204ENST00000532550 A0A0D9SFI3 127 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms