RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 ATP2B1P20020 1258 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 SSTR4P31391 388 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 COX4I2Q96KJ9 171 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 FBXL18Q96ME1 805 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 CAPN6Q9Y6Q1 641 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 GNAT3A8MTJ3 354 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 CD97P48960 835 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 TNK2Q07912 1038 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 INTS5Q6P9B9 1019 aaKnown RBP7.45□□□□□ -1.22
CD44-230ENST00000528922 ARHGAP27Q6ZUM4 889 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 SPACA3Q8IXA5 215 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 MFSD4AQ8N468 514 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 NETO1Q8TDF5 533 aa7.45□□□□□ -1.22
CD44-230ENST00000528922 DHX38Q92620 1227 aaKnown RBP7.45□□□□□ -1.22
CD44-230ENST00000528922 SUCOQ9UBS9 1254 aaKnown RBP7.45□□□□□ -1.22
CD44-230ENST00000528922 C9IYK1 514 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 GRIK1P39086 918 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 KIR3DL1P43629 444 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 PMS1P54277 932 aaKnown RBP7.44□□□□□ -1.22
CD44-230ENST00000528922 ZMYM1Q5SVZ6 1142 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 PPFIBP1Q86W92 1011 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 DTWD2Q8NBA8 298 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 SREK1Q8WXA9 508 aaKnown RBP7.44□□□□□ -1.22
CD44-230ENST00000528922 DHRS1Q96LJ7 313 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 ASPNQ9BXN1 380 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 ZNF214Q9UL59 606 aaPredicted RBP7.44□□□□□ -1.22
CD44-230ENST00000528922 PCDHB10Q9UN67 800 aa7.44□□□□□ -1.22
CD44-230ENST00000528922 FAM155AB1AL88 458 aaPredicted RBP7.43□□□□□ -1.22
CD44-230ENST00000528922 GTF2F1P35269 517 aaKnown RBP eCLIP7.43□□□□□ -1.22
CD44-230ENST00000528922 RANGAP1P46060 587 aaPredicted RBP7.43□□□□□ -1.22
CD44-230ENST00000528922 CHMP4BP1P59074 171 aa7.43□□□□□ -1.22
CD44-230ENST00000528922 TNNI3KQ59H18 835 aa7.43□□□□□ -1.22
CD44-230ENST00000528922 TDRD10Q5VZ19 366 aaKnown RBP7.43□□□□□ -1.22
CD44-230ENST00000528922 ANKS3Q6ZW76 656 aa7.43□□□□□ -1.22
CD44-230ENST00000528922 ST14Q9Y5Y6 855 aa7.43□□□□□ -1.22
CD44-230ENST00000528922 SLC12A7Q9Y666 1083 aa7.43□□□□□ -1.22
CD44-230ENST00000528922 KLF4O43474 513 aa7.42□□□□□ -1.22
CD44-230ENST00000528922 STK10O94804 968 aaKnown RBP7.42□□□□□ -1.22
CD44-230ENST00000528922 SPINK2P20155 84 aa7.42□□□□□ -1.22
CD44-230ENST00000528922 RNF4P78317 190 aa7.42□□□□□ -1.22
CD44-230ENST00000528922 SF3A1Q15459 793 aaKnown RBP7.42□□□□□ -1.22
CD44-230ENST00000528922 IFI16Q16666 785 aaKnown RBP7.42□□□□□ -1.22
CD44-230ENST00000528922 NBPF9Q3BBW0 867 aa7.42□□□□□ -1.22
CD44-230ENST00000528922 CDKAL1Q5VV42 579 aa7.42□□□□□ -1.22
CD44-230ENST00000528922 HNRNPLLQ8WVV9 542 aaKnown RBP7.42□□□□□ -1.22
CD44-230ENST00000528922 HSPA12BQ96MM6 686 aa7.42□□□□□ -1.22
CD44-230ENST00000528922 TMEM265A0A087WTH1 108 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 KIAA1324LA8MWY0 1029 aaPredicted RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 TP53P04637 393 aaPredicted RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 SNW1Q13573 536 aaKnown RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 AXDND1Q5T1B0 1012 aaPredicted RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 DTX1Q86Y01 620 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 PIWIL2Q8TC59 973 aaKnown RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 MICAL1Q8TDZ2 1067 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 KLHL6Q8WZ60 621 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 DUSP15Q9H1R2 295 aaPredicted RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 PHAXQ9H814 394 aaKnown RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 SEMA3GQ9NS98 782 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 FAM86C1Q9NVL1 165 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 BSDC1Q9NW68 430 aaPredicted RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 ACTR10Q9NZ32 417 aa7.41□□□□□ -1.22
CD44-230ENST00000528922 PPP1R1BQ9UD71 204 aaPredicted RBP7.41□□□□□ -1.22
CD44-230ENST00000528922 WASH4PA8MWX3 477 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 SRFP11831 508 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 RBL2Q08999 1139 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 BNIP3Q12983 259 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 GNPTABQ3T906 1256 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 MKRN2Q9H000 416 aaKnown RBP7.4□□□□□ -1.22
CD44-230ENST00000528922 KCNH3Q9ULD8 1083 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 SNX11Q9Y5W9 270 aa7.4□□□□□ -1.22
CD44-230ENST00000528922 SHISA3A0PJX4 238 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 H3BS24 57 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 SHOXO15266 292 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 HYAL3O43820 417 aaPredicted RBP7.39□□□□□ -1.23
CD44-230ENST00000528922 ADAMTS4O75173 837 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 PRNPP04156 253 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 CLCN7P51798 805 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 AUHQ13825 339 aaKnown RBP7.39□□□□□ -1.23
CD44-230ENST00000528922 LARP1BQ659C4 914 aaKnown RBP7.39□□□□□ -1.23
CD44-230ENST00000528922 DCAF15Q66K64 600 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 NFXL1Q6ZNB6 911 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 CCDC144CPQ8IYA2 1237 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 CELF2-AS1Q8N7Q2 184 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 BCL7CQ8WUZ0 217 aaPredicted RBP7.39□□□□□ -1.23
CD44-230ENST00000528922 ARMC5Q96C12 935 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 DRC1Q96MC2 740 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 PRDM14Q9GZV8 571 aa7.39□□□□□ -1.23
CD44-230ENST00000528922 ZEB1P37275 1124 aaPredicted RBP7.38□□□□□ -1.23
CD44-230ENST00000528922 CD96P40200 585 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 SLC7A5Q01650 507 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 PRKCQQ04759 706 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 LRP8Q14114 963 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 AOC3Q16853 763 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 BBS9Q3SYG4 887 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 KIAA1211LQ6NV74 962 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 VHLLQ6RSH7 139 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 TMC3Q7Z5M5 1100 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 SPRED2Q7Z698 418 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 WFDC3Q8IUB2 231 aa7.38□□□□□ -1.23
CD44-230ENST00000528922 C7orf61Q8IZ16 206 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms