RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 LOC100996750A0A140TA64 210 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 PRAMEF22A3QJZ6 481 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 NEURL1BA8MQ27 555 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 C2CD2LO14523 706 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 IGSF3O75054 1194 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 EPXP11678 715 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 EPB42P16452 691 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 ALAS2P22557 587 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 TM4SF4P48230 202 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 CRY2Q49AN0 593 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 B4GALNT3Q6L9W6 998 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 DPP8Q6V1X1 898 aaPredicted RBP6.18□□□□□ -1.42
CD44-218ENST00000525469 NBPF11Q86T75 865 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 CDCA5Q96FF9 252 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 ZNF496Q96IT1 587 aaPredicted RBP6.18□□□□□ -1.42
CD44-218ENST00000525469 KRTAP4-6Q9BYQ5 205 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 TSPYL1Q9H0U9 437 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 EFCC1Q9HA90 598 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 BRD7Q9NPI1 651 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 NOVA2Q9UNW9 492 aaKnown RBP6.18□□□□□ -1.42
CD44-218ENST00000525469 SZT2Q5T011 3432 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 SNED1Q8TER0 1413 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 SHTN1A0MZ66 631 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 TCIRG1Q13488 830 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 ELOAQ14241 798 aaKnown RBP6.17□□□□□ -1.42
CD44-218ENST00000525469 AXDND1Q5T1B0 1012 aaPredicted RBP6.17□□□□□ -1.42
CD44-218ENST00000525469 SH3PXD2AQ5TCZ1 1133 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 IER5Q5VY09 327 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 ZNF790Q6PG37 636 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 OTOP1Q7RTM1 612 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 TEX2Q8IWB9 1127 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 FTSJ3Q8IY81 847 aaKnown RBP6.17□□□□□ -1.42
CD44-218ENST00000525469 DPF2Q92785 391 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 ERO1AQ96HE7 468 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 SUSD3Q96L08 255 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 CRAMP1Q96RY5 1269 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 TRAIPQ9BWF2 469 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 NOP53Q9NZM5 478 aaKnown RBP6.17□□□□□ -1.42
CD44-218ENST00000525469 NUDCQ9Y266 331 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 PTPN22Q9Y2R2 807 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 COL6A3P12111 3177 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 KIF7Q2M1P5 1343 aa6.17□□□□□ -1.42
CD44-218ENST00000525469 SHISA8B8ZZ34 492 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 TGFBR3LH3BV60 316 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 RPS12P25398 132 aaKnown RBP6.16□□□□□ -1.42
CD44-218ENST00000525469 HOXA10P31260 410 aaPredicted RBP6.16□□□□□ -1.42
CD44-218ENST00000525469 NF2P35240 595 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 TYRO3Q06418 890 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 KIAA2012Q0VF49 1180 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 ARHGEF6Q15052 776 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 KIF4BQ2VIQ3 1234 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 HS1BP3Q53T59 392 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 ARMC5Q96C12 935 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 HSH2DQ96JZ2 352 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 MYH16Q9H6N6 1097 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 GGA3Q9NZ52 723 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 KCNH4Q9UQ05 1017 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 ATP6V0A2Q9Y487 856 aa6.16□□□□□ -1.42
CD44-218ENST00000525469 TAF1P21675 1872 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 UBE2Q2LH0YL09 131 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 PSMD14O00487 310 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 GNB5O14775 395 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 SIN3BO75182 1162 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 IGHA1P01876 353 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 PIP4K2AP48426 406 aaPredicted RBP6.15□□□□□ -1.42
CD44-218ENST00000525469 FAM193AP78312 1265 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 SLC20A2Q08357 652 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 SPEM2Q0P670 501 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 SLC9C1Q4G0N8 1177 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 SYT9Q86SS6 491 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 RGS22Q8NE09 1264 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 HTATIP2Q9BUP3 242 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 RTFDC1Q9BY42 306 aaPredicted RBP6.15□□□□□ -1.42
CD44-218ENST00000525469 NR2E3Q9Y5X4 410 aa6.15□□□□□ -1.42
CD44-218ENST00000525469 CENPFP49454 3210 aa6.15□□□□□ -1.43
CD44-218ENST00000525469 ELOA3CA0A087WX78 387 aaPredicted RBP6.14□□□□□ -1.43
CD44-218ENST00000525469 A0A1W2PPC1 479 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 SPDYE3A6NKU9 549 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 ELOA3DA6NLF2 546 aaPredicted RBP6.14□□□□□ -1.43
CD44-218ENST00000525469 DYNC1I1O14576 645 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 EGFRP00533 1210 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 WEE1P30291 646 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 PCBP4P57723 403 aaKnown RBP6.14□□□□□ -1.43
CD44-218ENST00000525469 INHBEP58166 350 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 DMTNQ08495 405 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 MTHFSDQ2M296 383 aaKnown RBP6.14□□□□□ -1.43
CD44-218ENST00000525469 ELOA3BQ3SY89 546 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 TMCO4Q5TGY1 634 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 OTUD7BQ6GQQ9 843 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 CHSY3Q70JA7 882 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 BTLAQ7Z6A9 289 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 ELOA3Q8NG57 546 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 CD99L2Q8TCZ2 262 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 PBXIP1Q96AQ6 731 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 BTBD6Q96KE9 485 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 POLR3GLQ9BT43 218 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 R3HDMLQ9H3Y0 253 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 MTMR7Q9Y216 660 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 USP16Q9Y5T5 823 aa6.14□□□□□ -1.43
CD44-218ENST00000525469 CNTNAP5Q8WYK1 1306 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms