RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 RAD51AP2Q09MP3 1159 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 ASPNQ9BXN1 380 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 GPR62Q9BZJ7 368 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 C19orf73Q9NVV2 129 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 LMCD1Q9NZU5 365 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 PPT2Q9UMR5 302 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 ACRP10323 421 aa6.84□□□□□ -1.31
CD44-217ENST00000525348 SLC9A7Q96T83 725 aa6.84□□□□□ -1.31
CD44-217ENST00000525348 GINM1Q9NU53 330 aa6.84□□□□□ -1.31
CD44-217ENST00000525348 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.84□□□□□ -1.31
CD44-217ENST00000525348 TNFRSF10CO14798 259 aa6.83□□□□□ -1.32
CD44-217ENST00000525348 TPP2P29144 1249 aaPredicted RBP6.83□□□□□ -1.32
CD44-217ENST00000525348 NBPF12Q5TAG4 269 aaPredicted RBP6.83□□□□□ -1.32
CD44-217ENST00000525348 TSPYL5Q86VY4 417 aaPredicted RBP6.83□□□□□ -1.32
CD44-217ENST00000525348 TMEM192Q8IY95 271 aa6.83□□□□□ -1.32
CD44-217ENST00000525348 ZNF512BQ96KM6 892 aaPredicted RBP6.83□□□□□ -1.32
CD44-217ENST00000525348 KCNH3Q9ULD8 1083 aa6.83□□□□□ -1.32
CD44-217ENST00000525348 CTNND2Q9UQB3 1225 aa6.83□□□□□ -1.32
CD44-217ENST00000525348 CARMIL2Q6F5E8 1435 aa6.83□□□□□ -1.32
CD44-217ENST00000525348 FAM86C2PA6NEL3 165 aa6.82□□□□□ -1.32
CD44-217ENST00000525348 SNW1Q13573 536 aaKnown RBP6.82□□□□□ -1.32
CD44-217ENST00000525348 ATG4DQ86TL0 474 aaPredicted RBP6.82□□□□□ -1.32
CD44-217ENST00000525348 CREG2Q8IUH2 290 aa6.82□□□□□ -1.32
CD44-217ENST00000525348 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.82□□□□□ -1.32
CD44-217ENST00000525348 DNAJC25-GNG10A0A024R161 153 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 GJA8P48165 433 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 LRRFIP1Q32MZ4 808 aaKnown RBP6.81□□□□□ -1.32
CD44-217ENST00000525348 RALGPS1Q5JS13 557 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 CCDC81Q6ZN84 652 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 RUFY4Q6ZNE9 571 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 TMPRSS7Q7RTY8 843 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 FLAD1Q8NFF5 587 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 RASGRP4Q8TDF6 673 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 GPRASP2Q96D09 838 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 FMNL2Q96PY5 1086 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 FERD3LQ96RJ6 166 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.81□□□□□ -1.32
CD44-217ENST00000525348 TRIT1Q9H3H1 467 aaKnown RBP6.81□□□□□ -1.32
CD44-217ENST00000525348 ACBD3Q9H3P7 528 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 GPATCH2Q9NW75 528 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 SLAMF8Q9P0V8 285 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 EFR3BQ9Y2G0 817 aa6.81□□□□□ -1.32
CD44-217ENST00000525348 JUNBP17275 347 aaPredicted RBP6.8□□□□□ -1.32
CD44-217ENST00000525348 SOX9P48436 509 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 NBPF9Q3BBW0 867 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 TMC3Q7Z5M5 1100 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 SLC6A18Q96N87 628 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 ALPK1Q96QP1 1244 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 KRTAP9-2Q9BYQ4 174 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 DUSP13Q9UII6 198 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 PCDHA11Q9Y5I1 949 aa6.8□□□□□ -1.32
CD44-217ENST00000525348 CLEC3AO75596 197 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 CCNFP41002 786 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 RNF4P78317 190 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 NMIQ13287 307 aaPredicted RBP6.79□□□□□ -1.32
CD44-217ENST00000525348 ZYXQ15942 572 aaKnown RBP6.79□□□□□ -1.32
CD44-217ENST00000525348 FYB2Q5VWT5 728 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 FBXW10Q5XX13 1052 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 LSRQ86X29 649 aaPredicted RBP6.79□□□□□ -1.32
CD44-217ENST00000525348 RBBP8NLQ8NC74 664 aaPredicted RBP6.79□□□□□ -1.32
CD44-217ENST00000525348 HDAC8Q9BY41 377 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 TGIF2Q9GZN2 237 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 PODXL2Q9NZ53 605 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 MINPP1Q9UNW1 487 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 RNF114Q9Y508 228 aa6.79□□□□□ -1.32
CD44-217ENST00000525348 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.78□□□□□ -1.32
CD44-217ENST00000525348 C9IYK1 514 aa6.78□□□□□ -1.32
CD44-217ENST00000525348 PAX4O43316 350 aa6.78□□□□□ -1.32
CD44-217ENST00000525348 IMPDH2P12268 514 aa6.78□□□□□ -1.32
CD44-217ENST00000525348 EGR3Q06889 387 aa6.78□□□□□ -1.32
CD44-217ENST00000525348 INTS3Q68E01 1043 aaKnown RBP6.78□□□□□ -1.32
CD44-217ENST00000525348 PPFIBP1Q86W92 1011 aa6.78□□□□□ -1.32
CD44-217ENST00000525348 TAB3Q8N5C8 712 aaPredicted RBP6.78□□□□□ -1.32
CD44-217ENST00000525348 ADAMTS10Q9H324 1103 aa6.78□□□□□ -1.32
CD44-217ENST00000525348 LTKP29376 864 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 GDNFP39905 211 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 CHMP4BP1P59074 171 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 ERVFC1P60507 584 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 TEKQ02763 1124 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 FAM168AQ92567 244 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 ASIC4Q96FT7 647 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 PRDM14Q9GZV8 571 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 SP110Q9HB58 689 aa6.77□□□□□ -1.33
CD44-217ENST00000525348 KRTAP9-6A0A140TA67 174 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 BIN1O00499 593 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 SHOXO15266 292 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 PRAMEF1O95521 474 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 NASPP49321 788 aaPredicted RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 RBM25P49756 843 aaKnown RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 COL9A2Q14055 689 aaPredicted RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 TDRD10Q5VZ19 366 aaKnown RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 UNC5AQ6ZN44 842 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 TTC6Q86TZ1 520 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 SYTL5Q8TDW5 730 aaPredicted RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 TM9SF2Q99805 663 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 SUCOQ9UBS9 1254 aaKnown RBP6.76□□□□□ -1.33
CD44-217ENST00000525348 EBF1Q9UH73 591 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 TMEM59LQ9UK28 342 aa6.76□□□□□ -1.33
CD44-217ENST00000525348 LTBP3Q9NS15 1303 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms