RNA–Protein interactions for RNA: ENST00000524226.5

PCM1-222, Transcript of pericentriolar material 1, human

TSL 1 (best) BASIC

Gene PCM1, Length 5,955 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-222	ENST00000524226	SF3B3	Q15393	1217 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	TMED8	Q6PL24	325 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	CLEC17A	Q6ZS10	378 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	PNMA8A	Q86V59	439 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	IQCA1	Q86XH1	822 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	GRAPL	Q8TC17	118 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	SLC16A10	Q8TF71	515 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	LMBR1	Q8WVP7	490 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	ESR2	Q92731	530 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	JAKMIP2	Q96AA8	810 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	ZNF804B	A4D1E1	1349 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	WDR19	Q8NEZ3	1342 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	SYCE3	A1L190	88 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	NDC80	O14777	642 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	ZBTB43	O43298	467 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	URI1	O94763	535 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	MYC	P01106	439 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	FGA	P02671	866 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	GYG1	P46976	350 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	MNAT1	P51948	309 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	RBM10	P98175	930 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	KIAA0753	Q2KHM9	967 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	DNAJC21	Q5F1R6	531 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	PI16	Q6UXB8	463 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	CHST3	Q7LGC8	479 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	TMC4	Q7Z404	712 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	CATIP	Q7Z7H3	387 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	DHX37	Q8IY37	1157 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	IFNL3	Q8IZI9	196 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	PPFIBP2	Q8ND30	876 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	RAET1E	Q8TD07	263 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	SELENOO	Q9BVL4	669 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	LMBRD1	Q9NUN5	540 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	BCCIP	Q9P287	314 aa	Known RBP eCLIP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	LEMD3	Q9Y2U8	911 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	EIF4E1B	A6NMX2	242 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	TMCO5B	A8MYB1	307 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	PPEF1	O14829	653 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	RANBP6	O60518	1105 aa	Known RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	ATP2B4	P23634	1241 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	CTDSPL2	Q05D32	466 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	PICALM	Q13492	652 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	PKP1	Q13835	747 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	TOB2	Q14106	344 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	STX1A	Q16623	288 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	FERMT3	Q86UX7	667 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	KRT222	Q8N1A0	295 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	CTCFL	Q8NI51	663 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	GABPB2	Q8TAK5	448 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	COA7	Q96BR5	231 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	ZBED2	Q9BTP6	218 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	RNF216	Q9NWF9	866 aa	Predicted RBP	2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	ATRN	O75882	1429 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	TUBGCP6	Q96RT7	1819 aa		2.91	□□□□□ -1.94
PCM1-222	ENST00000524226	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ERICH4	A6NGS2	130 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	LARGE1	O95461	756 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	SERPINB2	P05120	415 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CALM1	P0DP23	149 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CALM2	P0DP24	149 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CALM3	P0DP25	149 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	KIF5B	P33176	963 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	IARS	P41252	1262 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CEBPZ	Q03701	1054 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	DNM1	Q05193	864 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	PPARA	Q07869	468 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	HLTF	Q14527	1009 aa	Known RBP eCLIP	2.9	□□□□□ -1.94	5e-7	■□□□□ 10.4
PCM1-222	ENST00000524226	ERCC6L	Q2NKX8	1250 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	MAP7D1	Q3KQU3	841 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ATL3	Q6DD88	541 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	MTFR1L	Q9H019	292 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	GOPC	Q9HD26	462 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	RBM28	Q9NW13	759 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ORC3	Q9UBD5	711 aa	Predicted RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ANGEL1	Q9UNK9	670 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	MINPP1	Q9UNW1	487 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	NR2E3	Q9Y5X4	410 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ZMYM6	O95789	1325 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	MYH3	P11055	1940 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226		A0A1B0GUA9	196 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226		B4E1Z4	1266 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	KDM4A	O75164	1064 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	GMNN	O75496	209 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ATP2A2	P16615	1042 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	FGFR2	P21802	821 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	ATP5D	P30049	168 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CYLC1	P35663	651 aa	Predicted RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	APLP1	P51693	650 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	SCRN1	Q12765	414 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	RTN1	Q16799	776 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	IFIT1B	Q5T764	474 aa	Known RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CIAPIN1	Q6FI81	312 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CDC37L1	Q7L3B6	337 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	MICU3	Q86XE3	530 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CCDC50	Q8IVM0	306 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	FAM177A1	Q8N128	213 aa	Predicted RBP	2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	CCDC24	Q8N4L8	307 aa		2.9	□□□□□ -1.94
PCM1-222	ENST00000524226	MSANTD4	Q8NCY6	345 aa		2.9	□□□□□ -1.94

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms