RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 MYOM1P52179 1685 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 ABCC3O15438 1527 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 JUNBP17275 347 aaPredicted RBP7.72□□□□□ -1.17
NUP54-218ENST00000515460 ATP2B2Q01814 1243 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 PDZD3Q86UT5 571 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 STK11IPQ8N1F8 1099 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 NETO1Q8TDF5 533 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 PDGFDQ9GZP0 370 aaPredicted RBP7.72□□□□□ -1.17
NUP54-218ENST00000515460 CBX8Q9HC52 389 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 PCOLCE2Q9UKZ9 415 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 U3KQE9 123 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 PZPP20742 1482 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 CCDC141Q6ZP82 1450 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 EHBP1L1Q8N3D4 1523 aa7.72□□□□□ -1.17
NUP54-218ENST00000515460 ARNTP27540 789 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 CD96P40200 585 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 FMR1Q06787 632 aaKnown RBP eCLIP7.71□□□□□ -1.18
NUP54-218ENST00000515460 ZNF792Q3KQV3 632 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 ALG1LQ6GMV1 187 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 PKNOX2Q96KN3 472 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 SRCIN1Q9C0H9 1055 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 SPHKAPQ2M3C7 1700 aa7.71□□□□□ -1.18
NUP54-218ENST00000515460 ZBTB7AO95365 584 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 NEFMP07197 916 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 CD8BP10966 210 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 MPRIPQ6WCQ1 1025 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 WFDC3Q8IUB2 231 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.7□□□□□ -1.18
NUP54-218ENST00000515460 ISL2Q96A47 359 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 MISP3Q96FF7 219 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 ACSBG1Q96GR2 724 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 DUSP23Q9BVJ7 150 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 CSADQ9Y600 493 aa7.7□□□□□ -1.18
NUP54-218ENST00000515460 HSPA1AP0DMV8 641 aaKnown RBP7.69□□□□□ -1.18
NUP54-218ENST00000515460 HSPA1BP0DMV9 641 aaKnown RBP7.69□□□□□ -1.18
NUP54-218ENST00000515460 PDIA4P13667 645 aaKnown RBP7.69□□□□□ -1.18
NUP54-218ENST00000515460 ATF3P18847 181 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 NME2P22392 152 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 GSTT1P30711 240 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 FZD5Q13467 585 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 ZC3H12AQ5D1E8 599 aaKnown RBP7.69□□□□□ -1.18
NUP54-218ENST00000515460 TOP6BLQ8N6T0 577 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 GPBAR1Q8TDU6 330 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 AATKQ6ZMQ8 1374 aa7.69□□□□□ -1.18
NUP54-218ENST00000515460 ASXL1Q8IXJ9 1541 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 GIPC1O14908 333 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 PAPLNO95428 1278 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 ITIH2P19823 946 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 AOC3Q16853 763 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 EMILIN2Q9BXX0 1053 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 SPG7Q9UQ90 795 aa7.68□□□□□ -1.18
NUP54-218ENST00000515460 NKTRP30414 1462 aaKnown RBP7.68□□□□□ -1.18
NUP54-218ENST00000515460 RGPD1P0DJD0 1748 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.67□□□□□ -1.18
NUP54-218ENST00000515460 BIN1O00499 593 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 NBPF8Q3BBV2 869 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 TPTE2Q6XPS3 522 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 GRIN3AQ8TCU5 1115 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 RC3H2Q9HBD1 1191 aaKnown RBP7.67□□□□□ -1.18
NUP54-218ENST00000515460 PICK1Q9NRD5 415 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 RRP7BPQ9NSQ0 103 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 VAV3Q9UKW4 847 aa7.67□□□□□ -1.18
NUP54-218ENST00000515460 FBXO24O75426 580 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 C8AP07357 584 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 FUT4P22083 530 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 OXCT1P55809 520 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 ERVK-24P63145 666 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 PRKCQQ04759 706 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 IFI16Q16666 785 aaKnown RBP7.66□□□□□ -1.18
NUP54-218ENST00000515460 PPM1JQ5JR12 505 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 POU5F2Q8N7G0 328 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 RNF214Q8ND24 703 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 PI4K2BQ8TCG2 481 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 HRASLS5Q96KN8 279 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 MBNL3Q9NUK0 354 aaKnown RBP7.66□□□□□ -1.18
NUP54-218ENST00000515460 PPM1HQ9ULR3 514 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 PLAGL2Q9UPG8 496 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 EID1Q9Y6B2 187 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 DISP2A7MBM2 1401 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 PTCH1Q13635 1447 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 VPS8Q8N3P4 1428 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 TNRC18O15417 2968 aaPredicted RBP7.66□□□□□ -1.18
NUP54-218ENST00000515460 ARHGEF5Q12774 1597 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 TNS1Q9HBL0 1735 aaKnown RBP7.66□□□□□ -1.18
NUP54-218ENST00000515460 PDE4DIPQ5VU43 2346 aa7.66□□□□□ -1.18
NUP54-218ENST00000515460 KRTAP4-8A0A0G2JLE6 195 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 DCDC2CA8MYV0 355 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 RNASE1P07998 156 aaKnown RBP7.65□□□□□ -1.18
NUP54-218ENST00000515460 ERVK-7P63135 1459 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 FGD1P98174 961 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 NUP188Q5SRE5 1749 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 AEBP1Q8IUX7 1158 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 UNC5CLQ8IV45 518 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 UBR1Q8IWV7 1749 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 C3orf58Q8NDZ4 430 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 NECAB3Q96P71 396 aaPredicted RBP7.65□□□□□ -1.18
NUP54-218ENST00000515460 CEP44Q9C0F1 390 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 ADAMTS6Q9UKP5 1117 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 KIAA1210Q9ULL0 1709 aa7.65□□□□□ -1.18
NUP54-218ENST00000515460 SAMM50Q9Y512 469 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms