RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ENGASEQ8NFI3 743 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 SPZ1Q9BXG8 430 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 RBSNQ9H1K0 784 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 NUP62CLQ9H1M0 184 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 MAD2L2Q9UI95 211 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 PCDHA7Q9UN72 937 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 CD2APQ9Y5K6 639 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 CLIC4Q9Y696 253 aa9.66□□□□□ -0.86
RNF4-220ENST00000513578 V9GY48 417 aaPredicted RBP9.66□□□□□ -0.86
RNF4-220ENST00000513578 BAZ2BQ9UIF8 2168 aaKnown RBP9.65□□□□□ -0.86
RNF4-220ENST00000513578 COL4A5P29400 1685 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 BTBD18B2RXH4 712 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 SNHG28P0DPA3 235 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 SCG2P13521 617 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 CMA1P23946 247 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 SHMT1P34896 483 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 FAM160A1Q05DH4 1040 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 GNL2Q13823 731 aaKnown RBP9.65□□□□□ -0.86
RNF4-220ENST00000513578 AXDND1Q5T1B0 1012 aaPredicted RBP9.65□□□□□ -0.86
RNF4-220ENST00000513578 FKBP1CQ5VVH2 108 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 KIAA0825Q8IV33 1275 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 CCAR1Q8IX12 1150 aaKnown RBP9.65□□□□□ -0.86
RNF4-220ENST00000513578 AGBL3Q8NEM8 1001 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 BICD2Q8TD16 824 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 TNFRSF25Q93038 417 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 SGIP1Q9BQI5 828 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 MTMR4Q9NYA4 1195 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 DACT1Q9NYF0 836 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 ZNF219Q9P2Y4 722 aaPredicted RBP9.65□□□□□ -0.86
RNF4-220ENST00000513578 PI4KBQ9UBF8 816 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 FAM198AQ9UFP1 575 aa9.65□□□□□ -0.86
RNF4-220ENST00000513578 LTBP3Q9NS15 1303 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 UBE2Q2LH0YL09 131 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 hCG_1984214I3L0E3 225 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 CUTAO60888 179 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 CAVIN2O95810 425 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 BMP15O95972 392 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 CALML3P27482 149 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 KRT2P35908 639 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 ME1P48163 572 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 TRAPPC10P48553 1259 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 PICALMQ13492 652 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 SNW1Q13573 536 aaKnown RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 SF3A1Q15459 793 aaKnown RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 NPY5RQ15761 445 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 MAP3K11Q16584 847 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 DALRD3Q5D0E6 543 aaKnown RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 TATDN1Q6P1N9 297 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 CCDC73Q6ZRK6 1079 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 ELOA2Q8IYF1 753 aaPredicted RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 CMTR1Q8N1G2 835 aaKnown RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 LARGE2Q8N3Y3 721 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 ZNF713Q8N859 430 aaPredicted RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 DAGLBQ8NCG7 672 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 MRPS27Q92552 414 aaKnown RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 MKL1Q969V6 931 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 SHISA4Q96DD7 197 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 CEP95Q96GE4 821 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 TIGD1Q96MW7 591 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 PPP1R9BQ96SB3 815 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 FTOQ9C0B1 505 aaKnown RBP eCLIP9.64□□□□□ -0.87
RNF4-220ENST00000513578 BRMS1Q9HCU9 246 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 HDAC9Q9UKV0 1011 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 ZNRF3Q9ULT6 936 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 KCNJ14Q9UNX9 436 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 CEP131Q9UPN4 1083 aa9.64□□□□□ -0.87
RNF4-220ENST00000513578 DICER1Q9UPY3 1922 aaKnown RBP9.64□□□□□ -0.87
RNF4-220ENST00000513578 NR1I2O75469 434 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 TTLL1O95922 423 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 PARP1P09874 1014 aaKnown RBP9.63□□□□□ -0.87
RNF4-220ENST00000513578 AKR1B1P15121 316 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 TOB1P50616 345 aaPredicted RBP9.63□□□□□ -0.87
RNF4-220ENST00000513578 CEBPZQ03701 1054 aaKnown RBP9.63□□□□□ -0.87
RNF4-220ENST00000513578 NFIAQ12857 509 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 SLC4A8Q2Y0W8 1093 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 CFAP100Q494V2 611 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 ASPRV1Q53RT3 343 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 FMR1NBQ8N0W7 255 aaPredicted RBP9.63□□□□□ -0.87
RNF4-220ENST00000513578 CCDC82Q8N4S0 544 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 ZNF579Q8NAF0 562 aaKnown RBP9.63□□□□□ -0.87
RNF4-220ENST00000513578 CCDC148Q8NFR7 591 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 TNMDQ9H2S6 317 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 RIOX1Q9H6W3 641 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 SYNPO2Q9UMS6 1093 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 STX8Q9UNK0 236 aa9.63□□□□□ -0.87
RNF4-220ENST00000513578 SPDYE2BA6NHP3 402 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 KLRF2D3W0D1 207 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 CYTH3O43739 400 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 SPDYE6P0CI01 402 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 CCDC192P0DO97 292 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 PTPREP23469 700 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 CCDC173Q0VFZ6 552 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 SLC35G1Q2M3R5 365 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 SH3BP5LQ7L8J4 393 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 NIM1KQ8IY84 436 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 STAG2Q8N3U4 1231 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 FSIP1Q8NA03 581 aa9.62□□□□□ -0.87
RNF4-220ENST00000513578 CCDC12Q8WUD4 166 aaPredicted RBP9.62□□□□□ -0.87
RNF4-220ENST00000513578 ANP32BQ92688 251 aaKnown RBP9.62□□□□□ -0.87
RNF4-220ENST00000513578 ZBED3Q96IU2 234 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms