RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	SNRK	Q9NRH2	765 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	THEG	Q9P2T0	379 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	MYO9B	Q13459	2157 aa		13.78	□□□□□ -0.2
RNF4-218	ENST00000513284	PQBP1	O60828	265 aa	Known RBP	13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	BAG3	O95817	575 aa		13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	PGK1	P00558	417 aa		13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	ERCC3	P19447	782 aa		13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	NAA16	Q6N069	864 aa	Predicted RBP	13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	MAML3	Q96JK9	1138 aa		13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	MEIS3	Q99687	375 aa		13.77	□□□□□ -0.21
RNF4-218	ENST00000513284	TMEM39A	Q9NV64	488 aa		13.77	□□□□□ -0.21
RNF4-218	ENST00000513284		A0A1W2PQ45	241 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-218	ENST00000513284		A0A1W2PQY0	241 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284		A0A1W2PRG0	241 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	CYP2E1	P05181	493 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	PLCG2	P16885	1265 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	TAL1	P17542	331 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	USP14	P54578	494 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	COG2	Q14746	738 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	RAB3GAP1	Q15042	981 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	KIAA1755	Q5JYT7	1200 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	TMEM240	Q5SV17	173 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	ANKRD33	Q7Z3H0	272 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	FEZ1	Q99689	392 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	SPATC1L	Q9H0A9	340 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	TCF20	Q9UGU0	1960 aa	Known RBP	13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	PLXNA1	Q9UIW2	1896 aa		13.76	□□□□□ -0.21
RNF4-218	ENST00000513284	SYNGAP1	Q96PV0	1343 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	TIMP1	P01033	207 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	SLC44A5	Q8NCS7	719 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	SHCBP1	Q8NEM2	672 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	TOX2	Q96NM4	488 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	GAS2L1	Q99501	681 aa	Predicted RBP	13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	NOL10	Q9BSC4	688 aa	Known RBP	13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	TRIM34	Q9BYJ4	488 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	XPNPEP3	Q9NQH7	507 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	FOCAD	Q5VW36	1801 aa		13.75	□□□□□ -0.21
RNF4-218	ENST00000513284	ZNF236	Q9UL36	1845 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	SRGAP3	O43295	1099 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	SHMT1	P34896	483 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	CERKL	Q49MI3	558 aa	Predicted RBP	13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	GORAB	Q5T7V8	394 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	MFSD5	Q6N075	450 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	EPHX3	Q9H6B9	360 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	PIH1D3	Q9NQM4	214 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	HOXC10	Q9NYD6	342 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	TBX21	Q9UL17	535 aa		13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.74	□□□□□ -0.21
RNF4-218	ENST00000513284	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ADAMTS4	O75173	837 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	HLA-DOA	P06340	250 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	UQCRFS1P1	P0C7P4	283 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	CDK7	P50613	346 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	PLCD1	P51178	756 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	IRX5	P78411	483 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	EVX2	Q03828	476 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	MTX1	Q13505	466 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ABCB5	Q2M3G0	1257 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ALDH1L2	Q3SY69	923 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ABRA	Q8N0Z2	381 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	LENG1	Q96BZ8	264 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	LRFN3	Q9BTN0	628 aa		13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	NOB1	Q9ULX3	412 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-218	ENST00000513284	ACR	P10323	421 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	RARB	P10826	455 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	IGFBP4	P22692	258 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	DSG3	P32926	999 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	TFF2	Q03403	129 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	SEPT2	Q15019	361 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	ZNF365	Q70YC5	407 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	RNF180	Q86T96	592 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	SIAH1	Q8IUQ4	282 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	KLHDC9	Q8NEP7	349 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	C1QTNF1	Q9BXJ1	281 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	EHD4	Q9H223	541 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	MROH8	Q9H579	483 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	SERPINB13	Q9UIV8	391 aa		13.72	□□□□□ -0.21
RNF4-218	ENST00000513284	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	DCDC2C	A8MYV0	355 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	CSF2RA	P15509	400 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	ZAP70	P43403	619 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	ACLY	P53396	1101 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	ZNF792	Q3KQV3	632 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	ATF7IP	Q6VMQ6	1270 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	CCDC129	Q6ZRS4	1044 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	NCAPG2	Q86XI2	1143 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	CDCA7L	Q96GN5	454 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	TINF2	Q9BSI4	451 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	TSEN34	Q9BSV6	310 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	NRBP1	Q9UHY1	535 aa		13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	YBX2	Q9Y2T7	364 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-218	ENST00000513284	TRANK1	O15050	2925 aa		13.7	□□□□□ -0.22
RNF4-218	ENST00000513284	PGK2	P07205	417 aa		13.7	□□□□□ -0.22
RNF4-218	ENST00000513284	CYP7A1	P22680	504 aa		13.7	□□□□□ -0.22
RNF4-218	ENST00000513284	KCNQ1	P51787	676 aa		13.7	□□□□□ -0.22
RNF4-218	ENST00000513284	GABPA	Q06546	454 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms