RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MYH8P13535 1937 aa11.87□□□□□ -0.51
NUP54-203ENST00000504173 CACNA1AO00555 2505 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 BDP1A6H8Y1 2624 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 MPHOSPH10O00566 681 aaKnown RBP11.86□□□□□ -0.51
NUP54-203ENST00000504173 SLC27A2O14975 620 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 EPB41L2O43491 1005 aaKnown RBP11.86□□□□□ -0.51
NUP54-203ENST00000504173 ASNSP08243 561 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 CYP21A2P08686 494 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 PCP11498 1178 aaKnown RBP11.86□□□□□ -0.51
NUP54-203ENST00000504173 AKR1B1P15121 316 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 RASA1P20936 1047 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 NECTIN1Q15223 517 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 ABCB5Q2M3G0 1257 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 CREB3L3Q68CJ9 461 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 MFSD6Q6ZSS7 791 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 MAFAQ8NHW3 353 aaPredicted RBP11.86□□□□□ -0.51
NUP54-203ENST00000504173 BRI3BPQ8WY22 251 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 CCDC17Q96LX7 622 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 ZCCHC17Q9NP64 241 aaKnown RBP11.86□□□□□ -0.51
NUP54-203ENST00000504173 CABP5Q9NP86 173 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 INCENPQ9NQS7 918 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.86□□□□□ -0.51
NUP54-203ENST00000504173 SNCAIPQ9Y6H5 919 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 DOCK1Q14185 1865 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 ZSWIM8A7E2V4 1837 aa11.86□□□□□ -0.51
NUP54-203ENST00000504173 ORC4O43929 436 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 RANBP6O60518 1105 aaKnown RBP11.85□□□□□ -0.51
NUP54-203ENST00000504173 GH2P01242 217 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 FGRP09769 529 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 MCCP23508 829 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 MAGEA10P43363 369 aaPredicted RBP11.85□□□□□ -0.51
NUP54-203ENST00000504173 UBXN2AP68543 259 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 SHROOM1Q2M3G4 852 aaPredicted RBP11.85□□□□□ -0.51
NUP54-203ENST00000504173 TRIM47Q96LD4 638 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 GINM1Q9NU53 330 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.85□□□□□ -0.51
NUP54-203ENST00000504173 ZBTB21Q9ULJ3 1066 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 TACC3Q9Y6A5 838 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 ALPK3Q96L96 1907 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 ATAD5Q96QE3 1844 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 NEDD4P46934 1319 aa11.85□□□□□ -0.51
NUP54-203ENST00000504173 TMEM265A0A087WTH1 108 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 SPDYE5A6NIY4 337 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TSPY2A6NKD2 308 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 E7EWF7 191 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TSPY3P0CV98 308 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TSPY8P0CW00 308 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 ZKSCAN1P17029 563 aaPredicted RBP11.84□□□□□ -0.51
NUP54-203ENST00000504173 HSPA4P34932 840 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 JAG1P78504 1218 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TFAP4Q01664 338 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TRDNQ13061 729 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 RAB3GAP1Q15042 981 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 FAM47AQ5JRC9 791 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TJAP1Q5JTD0 557 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TMEM179Q6ZVK1 233 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 CCDC84Q86UT8 332 aaPredicted RBP11.84□□□□□ -0.51
NUP54-203ENST00000504173 ERO1BQ86YB8 467 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 ESR2Q92731 530 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 OPTNQ96CV9 577 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 USP26Q9BXU7 913 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 KRT23Q9C075 422 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 CNNM2Q9H8M5 875 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 TAF6LQ9Y6J9 622 aa11.84□□□□□ -0.51
NUP54-203ENST00000504173 USP17L5A8MUK1 530 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 B4E1Z4 1266 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 SEC24BO95487 1268 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 PTPRAP18433 802 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 HOXD10P28358 340 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 GTF2A2P52657 109 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 SEPT2Q15019 361 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 RALYLQ86SE5 291 aaKnown RBP11.83□□□□□ -0.52
NUP54-203ENST00000504173 FAM43AQ8N2R8 423 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 RAET1EQ8TD07 263 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 CNKSR2Q8WXI2 1034 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 TBC1D2Q9BYX2 928 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 UBE2OQ9C0C9 1292 aaKnown RBP11.83□□□□□ -0.52
NUP54-203ENST00000504173 AS3MTQ9HBK9 375 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 ZMYND8Q9ULU4 1186 aaPredicted RBP11.83□□□□□ -0.52
NUP54-203ENST00000504173 ZHX2Q9Y6X8 837 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 NCOR1O75376 2440 aa11.83□□□□□ -0.52
NUP54-203ENST00000504173 CCL15-CCL14A0A0B4J2E2 113 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 KDM4AO75164 1064 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 OSBPP22059 807 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 CTGFP29279 349 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 GUCY1A2P33402 732 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 NT5C2P49902 561 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 ICA1Q05084 483 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 PPATQ06203 517 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 PPIL2Q13356 520 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 CCL15Q16663 113 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 STOX1Q6ZVD7 989 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 C7orf61Q8IZ16 206 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 RASEFQ8IZ41 740 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 NEDD1Q8NHV4 660 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 NCOA7Q8NI08 942 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 CDX2Q99626 313 aaPredicted RBP11.82□□□□□ -0.52
NUP54-203ENST00000504173 CRISPLD2Q9H0B8 497 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 UNC93B1Q9H1C4 597 aa11.82□□□□□ -0.52
NUP54-203ENST00000504173 PLIN4Q96Q06 1357 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms