RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF652Q9Y2D9 606 aa18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 DLEC1Q9Y238 1755 aa18.36■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 VWA3AA6NCI4 1184 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ARHGAP6O43182 974 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 MMP10P09238 476 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 GYG1P46976 350 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PPP2R5BQ15173 497 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 NBPF5PQ86XG9 351 aaPredicted RBP18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PHF20Q9BVI0 1012 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SAMSN1Q9NSI8 373 aaKnown RBP18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 AATFQ9NY61 560 aaKnown RBP eCLIP18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 VPS54Q9P1Q0 977 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ABCF2Q9UG63 623 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 KANK3Q6NY19 840 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PAXIP1Q6ZW49 1069 aaPredicted RBP18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 DACH1Q9UI36 760 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PPP2R2CQ9Y2T4 447 aa18.35■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 WNT7AO00755 349 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ADRA2BP18089 450 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 DYNLL1P63167 89 aaKnown RBP18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ZSCAN10Q96SZ4 725 aaPredicted RBP18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 NOL10Q9BSC4 688 aaKnown RBP18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 RAI14Q9P0K7 980 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 CYP2D7A0A087X1C5 515 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PRPF3O43395 683 aaKnown RBP18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PRDM1O75626 825 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PLCD1P51178 756 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SPECC1LQ69YQ0 1117 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 SH3RF1Q7Z6J0 888 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ZNF384Q8TF68 577 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 EPSTI1Q96J88 318 aa18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 BAG1Q99933 345 aaPredicted RBP18.34■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 CASZ1Q86V15 1759 aa18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 hCG_1642624A0A1W2PR95 340 aa18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 TRIM75PA6NK02 468 aa18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ZSCAN12O43309 604 aa18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 PLEKHA8P1O95397 391 aa18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 CDK11BP21127 795 aaKnown RBP18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 ERCC5P28715 1186 aaPredicted RBP18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 NR1I3Q14994 352 aa18.33■□□□□ 0.53
MSH5-SAPCD1-208ENST00000498473 FGRP09769 529 aa18.33■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 ADKP55263 362 aaKnown RBP18.33■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CLEC4GQ6UXB4 293 aa18.33■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 APTXQ7Z2E3 356 aaKnown RBP18.33■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TNFRSF25Q93038 417 aa18.33■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PARP3Q9Y6F1 533 aa18.33■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 STX10O60499 249 aa18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 KRT2P35908 639 aa18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TROAPQ12815 778 aa18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 NPY5RQ15761 445 aa18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 NOM1Q5C9Z4 860 aaKnown RBP18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 DHX58Q96C10 678 aa18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CDC5LQ99459 802 aaKnown RBP18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 V9GY48 417 aaPredicted RBP18.32■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 A0A1B0GTH6 734 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 IGSF3O75054 1194 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SERPINB2P05120 415 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CD44P16070 742 aaKnown RBP18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 AKAP17AQ02040 695 aaKnown RBP18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TOGARAM2Q6ZUX3 1019 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 KRT222Q8N1A0 295 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 BRIP1Q9BX63 1249 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 POLRMTO00411 1230 aaKnown RBP18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 GABPB1Q06547 395 aaPredicted RBP18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 UBE4AQ14139 1066 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 IFIT1BQ5T764 474 aaKnown RBP18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PAGE5Q96GU1 130 aa18.31■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SLFN14P0C7P3 912 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 XBP1P17861 261 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CASP1P29466 404 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TM4SF1P30408 202 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CUL4BQ13620 913 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CATIPQ7Z7H3 387 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SYMPKQ92797 1274 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 GNL3LQ9NVN8 582 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PPP1R1BQ9UD71 204 aaPredicted RBP18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TADA3O75528 432 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 URI1O94763 535 aaPredicted RBP18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CLCN6P51797 869 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 EVX2Q03828 476 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 ARHGAP29Q52LW3 1261 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PRR5LQ6MZQ0 368 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CTR9Q6PD62 1173 aa18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 RBM28Q9NW13 759 aaKnown RBP18.3■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TEX33O43247 280 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 AFMP43652 599 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 DPYDQ12882 1025 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CT47A1Q5JQC4 288 aaPredicted RBP18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 ANKRD18AQ8IVF6 992 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 FAM84BQ96KN1 310 aaPredicted RBP18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 WDR24Q96S15 920 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SRRTQ9BXP5 876 aaKnown RBP18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 MYH13Q9UKX3 1938 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SF3B3Q15393 1217 aaKnown RBP18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SPATA1Q5VX52 437 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TMTC3Q6ZXV5 915 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CNBD1Q8NA66 436 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 FERMT2Q96AC1 680 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CARD6Q9BX69 1037 aa18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 BSDC1Q9NW68 430 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms