RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 A0A1W2PRG0 241 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 ZNF213O14771 459 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 BMP2KLQ5H9B9 411 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 CATSPERGQ6ZRH7 1159 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 NBPF11Q86T75 865 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 CLEC10AQ8IUN9 316 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 GPRC5AQ8NFJ5 357 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 ARHGAP39Q9C0H5 1083 aa19.4■□□□□ 0.7
SF3A1-209ENST00000496189 RNF41Q9H4P4 317 aaPredicted RBP19.4■□□□□ 0.7
SF3A1-209ENST00000496189 WDR46O15213 610 aaKnown RBP19.39■□□□□ 0.69
SF3A1-209ENST00000496189 RANBP6O60518 1105 aaKnown RBP19.39■□□□□ 0.69
SF3A1-209ENST00000496189 TTLL1O95922 423 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 PCP11498 1178 aaKnown RBP19.39■□□□□ 0.69
SF3A1-209ENST00000496189 CCNA1P78396 465 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 TFAP4Q01664 338 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 NEDD1Q8NHV4 660 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 RAET1EQ8TD07 263 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 PAGR1Q9BTK6 254 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 DSCC1Q9BVC3 393 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 HOXC10Q9NYD6 342 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 CLIP2Q9UDT6 1046 aa19.39■□□□□ 0.69
SF3A1-209ENST00000496189 FOXP2O15409 715 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 COG2Q14746 738 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 IMMTQ16891 758 aaKnown RBP19.38■□□□□ 0.69
SF3A1-209ENST00000496189 SLC9C1Q4G0N8 1177 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 MFSD6Q6ZSS7 791 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 MYPNQ86TC9 1320 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 SPICE1Q8N0Z3 855 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 TRIM47Q96LD4 638 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 MORF4L1Q9UBU8 362 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 SRRDQ9UH36 339 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 SYNPO2Q9UMS6 1093 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 RABGAP1Q9Y3P9 1069 aa19.38■□□□□ 0.69
SF3A1-209ENST00000496189 PLIN4Q96Q06 1357 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 ORC4O43929 436 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 FLOT1O75955 427 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 CHMLP26374 656 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 NT5C2P49902 561 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 HAND2P61296 217 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 FAM47AQ5JRC9 791 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 RRP12Q5JTH9 1297 aaKnown RBP19.37■□□□□ 0.69
SF3A1-209ENST00000496189 MTMR4Q9NYA4 1195 aa19.37■□□□□ 0.69
SF3A1-209ENST00000496189 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.37■□□□□ 0.69
SF3A1-209ENST00000496189 MAPK4P31152 587 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 ERVK-9P63128 1117 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 ERVK-24P63145 666 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 AKNAD1Q5T1N1 836 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 SAMD1Q6SPF0 538 aaPredicted RBP19.36■□□□□ 0.69
SF3A1-209ENST00000496189 CASC1Q6TDU7 716 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 SKAP1Q86WV1 359 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 SIAH1Q8IUQ4 282 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 CEP95Q96GE4 821 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 STX8Q9UNK0 236 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 PTCH2Q9Y6C5 1203 aa19.36■□□□□ 0.69
SF3A1-209ENST00000496189 LBX2Q6XYB7 198 aa19.35■□□□□ 0.69
SF3A1-209ENST00000496189 KIAA1211Q6ZU35 1233 aa19.35■□□□□ 0.69
SF3A1-209ENST00000496189 MB21D1Q8N884 522 aa19.35■□□□□ 0.69
SF3A1-209ENST00000496189 STAG1Q8WVM7 1258 aa19.35■□□□□ 0.69
SF3A1-209ENST00000496189 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.35■□□□□ 0.69
SF3A1-209ENST00000496189 ISY1Q9ULR0 285 aaKnown RBP19.35■□□□□ 0.69
SF3A1-209ENST00000496189 GREB1LQ9C091 1923 aaPredicted RBP19.35■□□□□ 0.69
SF3A1-209ENST00000496189 IGKV6D-41A0A0C4DH26 115 aa19.34■□□□□ 0.69
SF3A1-209ENST00000496189 SPDYE16A6NNV3 312 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-209ENST00000496189 ESR2Q92731 530 aa19.34■□□□□ 0.69
SF3A1-209ENST00000496189 RBPJLQ9UBG7 517 aa19.34■□□□□ 0.69
SF3A1-209ENST00000496189 BIN2Q9UBW5 565 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-209ENST00000496189 CTDP1Q9Y5B0 961 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-209ENST00000496189 MGAMO43451 1857 aa19.33■□□□□ 0.69
SF3A1-209ENST00000496189 F5H6K3 240 aa19.33■□□□□ 0.68
SF3A1-209ENST00000496189 PRKCZQ05513 592 aa19.33■□□□□ 0.68
SF3A1-209ENST00000496189 KLRC3Q07444 240 aa19.33■□□□□ 0.68
SF3A1-209ENST00000496189 WDR78Q5VTH9 848 aa19.33■□□□□ 0.68
SF3A1-209ENST00000496189 MKL1Q969V6 931 aa19.33■□□□□ 0.68
SF3A1-209ENST00000496189 IVNS1ABPQ9Y6Y0 642 aa19.33■□□□□ 0.68
SF3A1-209ENST00000496189 FGRP09769 529 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 CTGFP29279 349 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 DSG3P32926 999 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 CCDC178Q5BJE1 867 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 FAM83BQ5T0W9 1011 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 LRRC47Q8N1G4 583 aaKnown RBP19.32■□□□□ 0.68
SF3A1-209ENST00000496189 SLAIN1Q8ND83 568 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 GMCL1P1Q8NEA9 526 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 CNNM2Q9H8M5 875 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 TXNRD2Q9NNW7 524 aa19.32■□□□□ 0.68
SF3A1-209ENST00000496189 MYH4Q9Y623 1939 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 ZSWIM8A7E2V4 1837 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 SGSM2O43147 1006 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 GRK4P32298 578 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 FLT3LGP49771 235 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 UBXN2AP68543 259 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 CAP1Q01518 475 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 TRDNQ13061 729 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 PLS1Q14651 629 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 IQCA1Q86XH1 822 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 SOCS4Q8WXH5 440 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 TMEM106CQ9BVX2 250 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 KRT23Q9C075 422 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 INCENPQ9NQS7 918 aa19.31■□□□□ 0.68
SF3A1-209ENST00000496189 U3KPZ7 1027 aaPredicted RBP19.31■□□□□ 0.68
SF3A1-209ENST00000496189 CDC45O75419 566 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms