RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 ABCB5Q2M3G0 1257 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 CERKLQ49MI3 558 aaPredicted RBP9.77□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L2Q6R6M4 530 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 SIAH1Q8IUQ4 282 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 EXOC6Q8TAG9 804 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 PXYLP1Q8TE99 480 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 TRIB2Q92519 343 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 USP6NLQ92738 828 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 COA7Q96BR5 231 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 C12orf42Q96LP6 360 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 DEFB118Q96PH6 123 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 HAUS7Q99871 368 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 PAGR1Q9BTK6 254 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 TRIM34Q9BYJ4 488 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 PAK6Q9NQU5 681 aaPredicted RBP9.77□□□□□ -0.85
HDAC6-234ENST00000493923 MCM9Q9NXL9 1143 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 TMOD4Q9NZQ9 345 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 BTBD7Q9P203 1132 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 MYH8P13535 1937 aa9.77□□□□□ -0.85
HDAC6-234ENST00000493923 C19orf81C9J6K1 198 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 IGSF3O75054 1194 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 HMMRO75330 724 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 FARP2O94887 1054 aaPredicted RBP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 SGPL1O95470 568 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 POLR3DP05423 398 aaPredicted RBP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 AKR1B1P15121 316 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 VCAM1P19320 739 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 CYP2B6P20813 491 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 ERVK-9P63128 1117 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 ERVK-24P63145 666 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 PABPC4Q13310 644 aaKnown RBP eCLIP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 PDE3AQ14432 1141 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 OTUD7AQ8TE49 926 aaPredicted RBP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 CRNKL1Q9BZJ0 848 aaKnown RBP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 CRISPLD2Q9H0B8 497 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 PUS7LQ9H0K6 701 aaKnown RBP9.76□□□□□ -0.85
HDAC6-234ENST00000493923 PCDHB15Q9Y5E8 787 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 DNAH12Q6ZR08 3092 aa9.76□□□□□ -0.85
HDAC6-234ENST00000493923 PARP14Q460N5 1801 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 LAMA3Q16787 3333 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 TTF1Q15361 905 aaPredicted RBP9.75□□□□□ -0.85
HDAC6-234ENST00000493923 MORN1Q5T089 497 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 LHX8Q68G74 356 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 CATSPERGQ6ZRH7 1159 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 TTC6Q86TZ1 520 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 GPRC5AQ8NFJ5 357 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 DCBLD2Q96PD2 775 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 KIAA1683Q9H0B3 1180 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 GINM1Q9NU53 330 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 FLRT1Q9NZU1 646 aa9.75□□□□□ -0.85
HDAC6-234ENST00000493923 SPDYE16A6NNV3 312 aaPredicted RBP9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L15C9J2P7 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L13C9JLJ4 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L11C9JVI0 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L18D6R9N7 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L22D6RA61 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L17D6RBQ6 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L19D6RCP7 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L20D6RJB6 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 TFRCP02786 760 aaKnown RBP9.74□□□□□ -0.85
HDAC6-234ENST00000493923 HMGCRP04035 888 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 XRCC6P12956 609 aaKnown RBP eCLIP9.74□□□□□ -0.85
HDAC6-234ENST00000493923 FXR1P51114 621 aaKnown RBP eCLIP9.74□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L24Q0WX57 530 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 MAP3K21Q5TCX8 1036 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 GPR142Q7Z601 462 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 DPF3Q92784 378 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 PAWRQ96IZ0 340 aaKnown RBP9.74□□□□□ -0.85
HDAC6-234ENST00000493923 FEZ1Q99689 392 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 LRRCC1Q9C099 1032 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 RPAP3Q9H6T3 665 aaPredicted RBP9.74□□□□□ -0.85
HDAC6-234ENST00000493923 DCTPP1Q9H773 170 aa9.74□□□□□ -0.85
HDAC6-234ENST00000493923 A0A0G2JMZ2 1700 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 COL11A1P12107 1806 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 DDX11L8A8MPP1 907 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L12C9JPN9 530 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 USP17L21D6R901 530 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 MPHOSPH10O00566 681 aaKnown RBP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 CCND3P30281 292 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 CDK8P49336 464 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 CACNB2Q08289 660 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 C12orf60Q5U649 245 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 CTR9Q6PD62 1173 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 PLEKHH3Q7Z736 793 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 CERS3Q8IU89 383 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 STK11IPQ8N1F8 1099 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 NPLOC4Q8TAT6 608 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 NKX2-3Q8TAU0 364 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 OSBP2Q969R2 916 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 PRO3102Q9H379 93 aa9.73□□□□□ -0.85
HDAC6-234ENST00000493923 GREB1LQ9C091 1923 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 ZNFX1Q9P2E3 1918 aaKnown RBP9.73□□□□□ -0.85
HDAC6-234ENST00000493923 FRMPD3Q5JV73 1810 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 M0R2C6 588 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 KIF20AO95235 890 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 UBE3CQ15386 1083 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 TMED8Q6PL24 325 aaPredicted RBP9.72□□□□□ -0.85
HDAC6-234ENST00000493923 SPICE1Q8N0Z3 855 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms