RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 TNFRSF25Q93038 417 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 ANKRD2Q9GZV1 360 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 COL24A1Q17RW2 1714 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 UFL1O94874 794 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 SLURP2P0DP57 97 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 TOP1P11387 765 aaKnown RBP14.21□□□□□ -0.14
HMGN1-220ENST00000492280 SCG2P13521 617 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 GPSM2P81274 684 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 CBX1P83916 185 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 IL17AQ16552 155 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 TRAPPC3LQ5T215 181 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 CLEC10AQ8IUN9 316 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 PNMA1Q8ND90 353 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 MKNK2Q9HBH9 465 aa14.21□□□□□ -0.14
HMGN1-220ENST00000492280 IRS2Q9Y4H2 1338 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 CTIFO43310 598 aaKnown RBP14.2□□□□□ -0.14
HMGN1-220ENST00000492280 NEMFO60524 1076 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 PRKCSHP14314 528 aaPredicted RBP14.2□□□□□ -0.14
HMGN1-220ENST00000492280 MORC3Q14149 939 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 PRR5LQ6MZQ0 368 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 PDCL2Q8N4E4 241 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 KAT14Q9H8E8 782 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 ARPP21Q9UBL0 812 aaPredicted RBP14.2□□□□□ -0.14
HMGN1-220ENST00000492280 F8W031 263 aaPredicted RBP14.2□□□□□ -0.14
HMGN1-220ENST00000492280 ORC4O43929 436 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 FGRP09769 529 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 HOMER1Q86YM7 354 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 VSTM4Q8IW00 320 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 CCDC150Q8NCX0 1101 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 ATP8A2Q9NTI2 1148 aa14.2□□□□□ -0.14
HMGN1-220ENST00000492280 RBM28Q9NW13 759 aaKnown RBP14.2□□□□□ -0.14
HMGN1-220ENST00000492280 TAF1LQ8IZX4 1826 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 FANCGO15287 622 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 TEX33O43247 280 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 DDAH1O94760 285 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 GRAPQ13588 217 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 GRAPLQ8TC17 118 aaPredicted RBP14.19□□□□□ -0.14
HMGN1-220ENST00000492280 PAGE5Q96GU1 130 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 DESI2Q9BSY9 194 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 CEP131Q9UPN4 1083 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 DLEC1Q9Y238 1755 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 SEMA3EO15041 775 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 CYTH3O43739 400 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 TSPY3P0CV98 308 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 TSPY8P0CW00 308 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 C12orf60Q5U649 245 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 CPLX3Q8WVH0 158 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 BRMS1Q9HCU9 246 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 IMPACTQ9P2X3 320 aa14.19□□□□□ -0.14
HMGN1-220ENST00000492280 XDHP47989 1333 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 SARSP49591 514 aaKnown RBP14.18□□□□□ -0.14
HMGN1-220ENST00000492280 RC3H1Q5TC82 1133 aaKnown RBP14.18□□□□□ -0.14
HMGN1-220ENST00000492280 HEATR3Q7Z4Q2 680 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 EEF2KMTQ96G04 330 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 MTA3Q9BTC8 594 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 BTDP43251 543 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 RCAN1P53805 252 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 EIF6P56537 245 aaKnown RBP14.18□□□□□ -0.14
HMGN1-220ENST00000492280 MTF1Q14872 753 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 RPGRQ92834 1020 aaKnown RBP14.18□□□□□ -0.14
HMGN1-220ENST00000492280 MTRQ99707 1265 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 VAT1LQ9HCJ6 419 aa14.18□□□□□ -0.14
HMGN1-220ENST00000492280 MKRN1Q9UHC7 482 aaKnown RBP14.18□□□□□ -0.14
HMGN1-220ENST00000492280 A0A0U1RQJ8 604 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 RIMBP2O15034 1052 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 CUL4BQ13620 913 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 KARSQ15046 597 aaKnown RBP14.17□□□□□ -0.14
HMGN1-220ENST00000492280 ELF2Q15723 593 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 PFKFB3Q16875 520 aaPredicted RBP14.17□□□□□ -0.14
HMGN1-220ENST00000492280 ATRIPQ8WXE1 791 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 GJD4Q96KN9 370 aaPredicted RBP14.17□□□□□ -0.14
HMGN1-220ENST00000492280 MXD3Q9BW11 206 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 CTNND2Q9UQB3 1225 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 CALM1P0DP23 149 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 CALM2P0DP24 149 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 CALM3P0DP25 149 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 CCT6AP40227 531 aaKnown RBP14.17□□□□□ -0.14
HMGN1-220ENST00000492280 INF2Q27J81 1249 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 WWC2Q6AWC2 1192 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 UBE2Q2Q8WVN8 375 aa14.17□□□□□ -0.14
HMGN1-220ENST00000492280 PICALMQ13492 652 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 TOGARAM2Q6ZUX3 1019 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 ANKRD7Q92527 254 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 TMEM60Q9H2L4 133 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 DNAI1Q9UI46 699 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 MAD2L2Q9UI95 211 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 HOOK1Q9UJC3 728 aaKnown RBP14.16□□□□□ -0.14
HMGN1-220ENST00000492280 SYNRGQ9UMZ2 1314 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 SLFN14P0C7P3 912 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 ZNF18P17022 549 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 ATP2C1P98194 919 aaPredicted RBP14.16□□□□□ -0.14
HMGN1-220ENST00000492280 USP17L2Q6R6M4 530 aa14.16□□□□□ -0.14
HMGN1-220ENST00000492280 ZNF579Q8NAF0 562 aaKnown RBP14.16□□□□□ -0.14
HMGN1-220ENST00000492280 NT5DC1Q5TFE4 455 aa14.15□□□□□ -0.14
HMGN1-220ENST00000492280 TMEM139Q8IV31 216 aa14.15□□□□□ -0.14
HMGN1-220ENST00000492280 RGS22Q8NE09 1264 aa14.15□□□□□ -0.14
HMGN1-220ENST00000492280 KIF18AQ8NI77 898 aa14.15□□□□□ -0.14
HMGN1-220ENST00000492280 TMEM47Q9BQJ4 181 aa14.15□□□□□ -0.14
HMGN1-220ENST00000492280 RTFDC1Q9BY42 306 aaPredicted RBP14.15□□□□□ -0.14
HMGN1-220ENST00000492280 GDAQ9Y2T3 454 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms