RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 RPAP3Q9H6T3 665 aaPredicted RBP19.28■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 MTMR4Q9NYA4 1195 aa19.28■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 CDC45O75419 566 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 GCLCP48506 637 aaPredicted RBP19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 KIAA1755Q5JYT7 1200 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 PPP4R3BQ5MIZ7 849 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 CASC1Q6TDU7 716 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 TNS4Q8IZW8 715 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 GOPCQ9HD26 462 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 CLIP2Q9UDT6 1046 aa19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 U3KPZ7 1027 aaPredicted RBP19.27■□□□□ 0.68
MSH5-SAPCD1-206ENST00000491552 TTLL1O95922 423 aa19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 HERVK_113P62684 666 aa19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 LACTBP83111 547 aaPredicted RBP19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 KIF22Q14807 665 aa19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 CATSPERGQ6ZRH7 1159 aa19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 SPICE1Q8N0Z3 855 aa19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ANKRD13CQ8N6S4 541 aa19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 GTF3C2Q8WUA4 911 aaPredicted RBP19.26■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 NEDD4P46934 1319 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 WDR46O15213 610 aaKnown RBP19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 FAM110CQ1W6H9 321 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 KIAA1211Q6ZU35 1233 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 MKL1Q969V6 931 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 P2RX7Q99572 595 aaKnown RBP19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 TANGO6Q9C0B7 1094 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 SYNPO2Q9UMS6 1093 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 MYH4Q9Y623 1939 aa19.25■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 RAD21O60216 631 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 NT5C2P49902 561 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ARHGEF6Q15052 776 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 OTOP1Q7RTM1 612 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ESR2Q92731 530 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 MAP4K1Q92918 833 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 MCOLN1Q9GZU1 580 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 EFCC1Q9HA90 598 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 IL17RBQ9NRM6 502 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 TRIM17Q9Y577 477 aa19.24■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ZSWIM8A7E2V4 1837 aa19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 NMT2O60551 498 aa19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 CAP1Q01518 475 aa19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 PKN2Q16513 984 aaKnown RBP19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 LRRC47Q8N1G4 583 aaKnown RBP19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ARHGAP39Q9C0H5 1083 aa19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 LSG1Q9H089 658 aaKnown RBP19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 STX8Q9UNK0 236 aa19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 RBM8AQ9Y5S9 174 aaKnown RBP19.23■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 F5H6K3 240 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 NDUFB10O96000 172 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 KLRC3Q07444 240 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 GMCL1P1Q8NEA9 526 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 CNNM2Q9H8M5 875 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ANO2Q9NQ90 1003 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 TCP11L1Q9NUJ3 509 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 MORF4L1Q9UBU8 362 aa19.22■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 SPDYE16A6NNV3 312 aaPredicted RBP19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 ECM2O94769 699 aaPredicted RBP19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 CYP21A2P08686 494 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 PSMC4P43686 418 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 NOVP48745 357 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 FCGRTP55899 365 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 COG2Q14746 738 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 FAM83BQ5T0W9 1011 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 LBX2Q6XYB7 198 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 NKX2-3Q8TAU0 364 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 PAGR1Q9BTK6 254 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 KRT23Q9C075 422 aa19.21■□□□□ 0.67
MSH5-SAPCD1-206ENST00000491552 B4E1Z4 1266 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 KDM4AO75164 1064 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 FLOT1O75955 427 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 FMNL1O95466 1100 aaPredicted RBP19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 GNRH1P01148 92 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 CTGFP29279 349 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TRIM47Q96LD4 638 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TXNRD2Q9NNW7 524 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 RBPJLQ9UBG7 517 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 MYPNQ86TC9 1320 aa19.2■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 DSG3P32926 999 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ERVK-9P63128 1117 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ERVK-24P63145 666 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 SLFN13Q68D06 897 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 FBXO46Q6PJ61 603 aaPredicted RBP19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 POTEEQ6S8J3 1075 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 IQCA1Q86XH1 822 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 GPRC5AQ8NFJ5 357 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 NUP88Q99567 741 aaPredicted RBP19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 HOXC10Q9NYD6 342 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 RABGAP1Q9Y3P9 1069 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 MGAMO43451 1857 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 A0A0G2JMZ2 1700 aa19.19■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 PARP14Q460N5 1801 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 RLFQ13129 1914 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 PEX10O60683 326 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 CNMDO75829 334 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TRDNQ13061 729 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ZKSCAN3Q9BRR0 538 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 PTPN22Q9Y2R2 807 aa19.18■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TOP1P11387 765 aaKnown RBP19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 HOXD10P28358 340 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 PRMT2P55345 433 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms