RNA–Protein interactions for RNA: ENST00000490751.1

LDB1-204, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-204ENST00000490751 RWDD1Q9H446 243 aaPredicted RBP37.53■■■■□ 3.6
LDB1-204ENST00000490751 GREB1LQ9C091 1923 aaPredicted RBP37.53■■■■□ 3.6
LDB1-204ENST00000490751 GJA8P48165 433 aa37.52■■■■□ 3.6
LDB1-204ENST00000490751 TANGO6Q9C0B7 1094 aa37.52■■■■□ 3.6
LDB1-204ENST00000490751 PATL2C9JE40 543 aaKnown RBP37.51■■■■□ 3.6
LDB1-204ENST00000490751 GPR142Q7Z601 462 aa37.51■■■■□ 3.6
LDB1-204ENST00000490751 SOCS4Q8WXH5 440 aa37.51■■■■□ 3.6
LDB1-204ENST00000490751 LPAR1Q92633 364 aa37.51■■■■□ 3.6
LDB1-204ENST00000490751 NUDT12Q9BQG2 462 aa37.51■■■■□ 3.6
LDB1-204ENST00000490751 LNPKQ9C0E8 428 aa37.51■■■■□ 3.6
LDB1-204ENST00000490751 VCPKMTQ9H867 229 aa37.51■■■■□ 3.6
LDB1-204ENST00000490751 RLFQ13129 1914 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 CYP2B6P20813 491 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 CCNA1P78396 465 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 ATP2B2Q01814 1243 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 SMC5Q8IY18 1101 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 IFNL3Q8IZI9 196 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 KANSL2Q9H9L4 492 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 MKNK2Q9HBH9 465 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 BTBD7Q9P203 1132 aa37.5■■■■□ 3.59
LDB1-204ENST00000490751 HMGCRP04035 888 aa37.49■■■■□ 3.59
LDB1-204ENST00000490751 EEF2P13639 858 aaKnown RBP37.49■■■■□ 3.59
LDB1-204ENST00000490751 COG2Q14746 738 aa37.49■■■■□ 3.59
LDB1-204ENST00000490751 PLEKHH3Q7Z736 793 aa37.49■■■■□ 3.59
LDB1-204ENST00000490751 SPICE1Q8N0Z3 855 aa37.49■■■■□ 3.59
LDB1-204ENST00000490751 U2AF1L4Q8WU68 220 aaKnown RBP37.49■■■■□ 3.59
LDB1-204ENST00000490751 EVI5LQ96CN4 794 aa37.49■■■■□ 3.59
LDB1-204ENST00000490751 CWC22Q9HCG8 908 aaKnown RBP37.49■■■■□ 3.59
LDB1-204ENST00000490751 A0A0G2JMZ2 1700 aa37.48■■■■□ 3.59
LDB1-204ENST00000490751 RASA1P20936 1047 aa37.48■■■■□ 3.59
LDB1-204ENST00000490751 GNL3Q9BVP2 549 aaKnown RBP eCLIP37.48■■■■□ 3.59
LDB1-204ENST00000490751 NACAP1Q9BZK3 213 aa37.48■■■■□ 3.59
LDB1-204ENST00000490751 B4GALNT3Q6L9W6 998 aa37.47■■■■□ 3.59
LDB1-204ENST00000490751 PARP14Q460N5 1801 aa37.46■■■■□ 3.59
LDB1-204ENST00000490751 TRIB2Q92519 343 aa37.46■■■■□ 3.59
LDB1-204ENST00000490751 HOXC10Q9NYD6 342 aa37.46■■■■□ 3.59
LDB1-204ENST00000490751 SUPT16HQ9Y5B9 1047 aaKnown RBP37.46■■■■□ 3.59
LDB1-204ENST00000490751 IGHDP01880 384 aa37.45■■■■□ 3.59
LDB1-204ENST00000490751 MORN1Q5T089 497 aa37.45■■■■□ 3.59
LDB1-204ENST00000490751 WDR78Q5VTH9 848 aa37.45■■■■□ 3.59
LDB1-204ENST00000490751 PAK6Q9NQU5 681 aaPredicted RBP37.45■■■■□ 3.59
LDB1-204ENST00000490751 WDR46O15213 610 aaKnown RBP37.44■■■■□ 3.58
LDB1-204ENST00000490751 SGPL1O95470 568 aa37.44■■■■□ 3.58
LDB1-204ENST00000490751 XRCC5P13010 732 aaKnown RBP37.44■■■■□ 3.58
LDB1-204ENST00000490751 TRIM32Q13049 653 aa37.44■■■■□ 3.58
LDB1-204ENST00000490751 USP6NLQ92738 828 aa37.44■■■■□ 3.58
LDB1-204ENST00000490751 DEFB118Q96PH6 123 aa37.44■■■■□ 3.58
LDB1-204ENST00000490751 NAPBQ9H115 298 aa37.44■■■■□ 3.58
LDB1-204ENST00000490751 FLOT1O75955 427 aa37.43■■■■□ 3.58
LDB1-204ENST00000490751 RGS2P41220 211 aa37.43■■■■□ 3.58
LDB1-204ENST00000490751 CCDC129Q6ZRS4 1044 aa37.43■■■■□ 3.58
LDB1-204ENST00000490751 XRN2Q9H0D6 950 aaKnown RBP eCLIP37.43■■■■□ 3.58
LDB1-204ENST00000490751 DSG3P32926 999 aa37.42■■■■□ 3.58
LDB1-204ENST00000490751 ZNF287Q9HBT7 754 aa37.42■■■■□ 3.58
LDB1-204ENST00000490751 PRDM1O75626 825 aa37.41■■■■□ 3.58
LDB1-204ENST00000490751 GOPCQ9HD26 462 aa37.41■■■■□ 3.58
LDB1-204ENST00000490751 ZKSCAN1P17029 563 aaPredicted RBP37.4■■■■□ 3.58
LDB1-204ENST00000490751 CHD1LQ86WJ1 897 aa37.4■■■■□ 3.58
LDB1-204ENST00000490751 APBA2Q99767 749 aa37.4■■■■□ 3.58
LDB1-204ENST00000490751 RAD21O60216 631 aa37.39■■■■□ 3.58
LDB1-204ENST00000490751 MAP2K5Q13163 448 aa37.39■■■■□ 3.58
LDB1-204ENST00000490751 TRMT44Q8IYL2 757 aaKnown RBP37.39■■■■□ 3.58
LDB1-204ENST00000490751 ZNF444Q8N0Y2 327 aaPredicted RBP37.39■■■■□ 3.58
LDB1-204ENST00000490751 ATG4CQ96DT6 458 aa37.39■■■■□ 3.58
LDB1-204ENST00000490751 HMX1Q9NP08 348 aaPredicted RBP37.39■■■■□ 3.58
LDB1-204ENST00000490751 IVNS1ABPQ9Y6Y0 642 aa37.39■■■■□ 3.58
LDB1-204ENST00000490751 MYH4Q9Y623 1939 aa37.39■■■■□ 3.58
LDB1-204ENST00000490751 RPTORQ8N122 1335 aa37.38■■■■□ 3.58
LDB1-204ENST00000490751 PTPREP23469 700 aa37.38■■■■□ 3.57
LDB1-204ENST00000490751 SAMD1Q6SPF0 538 aaPredicted RBP37.38■■■■□ 3.57
LDB1-204ENST00000490751 UBE2Q1Q7Z7E8 422 aa37.38■■■■□ 3.57
LDB1-204ENST00000490751 MB21D1Q8N884 522 aa37.38■■■■□ 3.57
LDB1-204ENST00000490751 MOV10L1Q9BXT6 1211 aaKnown RBP37.38■■■■□ 3.57
LDB1-204ENST00000490751 SPATC1LQ9H0A9 340 aa37.38■■■■□ 3.57
LDB1-204ENST00000490751 NYAP2Q9P242 653 aa37.38■■■■□ 3.57
LDB1-204ENST00000490751 SLC15A5A6NIM6 579 aa37.37■■■■□ 3.57
LDB1-204ENST00000490751 FOXP2O15409 715 aa37.37■■■■□ 3.57
LDB1-204ENST00000490751 FARP2O94887 1054 aaPredicted RBP37.37■■■■□ 3.57
LDB1-204ENST00000490751 TFRCP02786 760 aaKnown RBP37.37■■■■□ 3.57
LDB1-204ENST00000490751 NUCB1Q02818 461 aa37.37■■■■□ 3.57
LDB1-204ENST00000490751 PPARAQ07869 468 aa37.37■■■■□ 3.57
LDB1-204ENST00000490751 CCL14Q16627 93 aa37.37■■■■□ 3.57
LDB1-204ENST00000490751 HELLSQ9NRZ9 838 aa37.37■■■■□ 3.57
LDB1-204ENST00000490751 COL11A1P12107 1806 aaPredicted RBP37.36■■■■□ 3.57
LDB1-204ENST00000490751 IGKV6D-41A0A0C4DH26 115 aa37.36■■■■□ 3.57
LDB1-204ENST00000490751 SLC3A2P08195 630 aaKnown RBP37.36■■■■□ 3.57
LDB1-204ENST00000490751 PDE4BQ07343 736 aa37.36■■■■□ 3.57
LDB1-204ENST00000490751 MAP3K21Q5TCX8 1036 aa37.36■■■■□ 3.57
LDB1-204ENST00000490751 CRISPLD2Q9H0B8 497 aa37.36■■■■□ 3.57
LDB1-204ENST00000490751 TRIM6-TRIM34B2RNG4 842 aa37.35■■■■□ 3.57
LDB1-204ENST00000490751 PRKAR2AP13861 404 aaKnown RBP37.35■■■■□ 3.57
LDB1-204ENST00000490751 FBXO28Q9NVF7 368 aa37.35■■■■□ 3.57
LDB1-204ENST00000490751 CAPN2P17655 700 aa37.34■■■■□ 3.57
LDB1-204ENST00000490751 GRB14Q14449 540 aa37.34■■■■□ 3.57
LDB1-204ENST00000490751 PLS1Q14651 629 aa37.34■■■■□ 3.57
LDB1-204ENST00000490751 FAM83BQ5T0W9 1011 aa37.34■■■■□ 3.57
LDB1-204ENST00000490751 VPS53Q5VIR6 699 aa37.34■■■■□ 3.57
LDB1-204ENST00000490751 FAM227BQ96M60 508 aa37.34■■■■□ 3.57
LDB1-204ENST00000490751 A0A0D9SFI3 127 aa37.33■■■■□ 3.57
LDB1-204ENST00000490751 TICAM2Q86XR7 235 aa37.33■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms