RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 PCDHA11Q9Y5I1 949 aa9.15□□□□□ -0.94
COL9A1-209ENST00000489861 SPTBN2O15020 2390 aa9.15□□□□□ -0.95
COL9A1-209ENST00000489861 C19orf81C9J6K1 198 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 DCXO43602 365 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 COBLO75128 1261 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 ARHGEF15O94989 841 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 IL9P15248 144 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 FGFR2P21802 821 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 ADORA2AP29274 412 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 CYP2C18P33260 490 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 CCNA1P78396 465 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 METTL24Q5JXM2 366 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 DPP9Q86TI2 863 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 TMEM199Q8N511 208 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.14□□□□□ -0.95
COL9A1-209ENST00000489861 LENG1Q96BZ8 264 aaPredicted RBP9.14□□□□□ -0.95
COL9A1-209ENST00000489861 KAZALD1Q96I82 304 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 IL23AQ9NPF7 189 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 IVNS1ABPQ9Y6Y0 642 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 KMT2EQ8IZD2 1858 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 MAP1BP46821 2468 aaKnown RBP9.14□□□□□ -0.95
COL9A1-209ENST00000489861 EP300Q09472 2414 aaPredicted RBP9.14□□□□□ -0.95
COL9A1-209ENST00000489861 SCN5AQ14524 2016 aa9.14□□□□□ -0.95
COL9A1-209ENST00000489861 KIF16BQ96L93 1317 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 VPS13AQ96RL7 3174 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 APBB1O00213 710 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 LPXNO60711 386 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 FGBP02675 491 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 CA3P07451 260 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 CDK7P50613 346 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 ACLYP53396 1101 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 RHBDL3P58872 404 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 GNAI1P63096 354 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 TCF15Q12870 199 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 FLIIQ13045 1269 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 SAMD1Q6SPF0 538 aaPredicted RBP9.13□□□□□ -0.95
COL9A1-209ENST00000489861 ERMP1Q7Z2K6 904 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 SPRED2Q7Z698 418 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 RNF180Q86T96 592 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 VWCEQ96DN2 955 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 STK31Q9BXU1 1019 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 STARD7Q9NQZ5 370 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 FAM86C1Q9NVL1 165 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 CFAP47Q6ZTR5 3102 aa9.13□□□□□ -0.95
COL9A1-209ENST00000489861 PTPRSQ13332 1948 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.12□□□□□ -0.95
COL9A1-209ENST00000489861 USP17L10C9JJH3 530 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 ADAMTS4O75173 837 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 RARBP10826 455 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 BTDP43251 543 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 DDX10Q13206 875 aaKnown RBP9.12□□□□□ -0.95
COL9A1-209ENST00000489861 GRB10Q13322 594 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 FKBP5Q13451 457 aaPredicted RBP9.12□□□□□ -0.95
COL9A1-209ENST00000489861 BEND3Q5T5X7 828 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 TET1Q8NFU7 2136 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 ZFHX4Q86UP3 3567 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 ZNF292O60281 2723 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 MCM3APO60318 1980 aa9.12□□□□□ -0.95
COL9A1-209ENST00000489861 UMODL1Q5DID0 1318 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 SALL1Q9NSC2 1324 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 DNAH14Q0VDD8 3507 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 F6X3S4 739 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 GRM8O00222 908 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 RGS20O76081 388 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 IFIT1P09914 478 aaKnown RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 TAL1P17542 331 aaPredicted RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 PTPN5P54829 565 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 IRX5P78411 483 aaPredicted RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 LEXMQ3ZCV2 418 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 CCSAPQ6IQ19 270 aaPredicted RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 KLHDC4Q8TBB5 520 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 ARNTL2Q8WYA1 636 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 SUCLG2Q96I99 432 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 MFSD14AQ96MC6 490 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 MTIF3Q9H2K0 278 aaKnown RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 UBE2ZQ9H832 354 aaPredicted RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 ALG13Q9NP73 1137 aaKnown RBP9.11□□□□□ -0.95
COL9A1-209ENST00000489861 SLC4A7Q9Y6M7 1214 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 CEP250Q9BV73 2442 aa9.11□□□□□ -0.95
COL9A1-209ENST00000489861 FASNP49327 2511 aaKnown RBP9.1□□□□□ -0.95
COL9A1-209ENST00000489861 MYADML2A6NDP7 307 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 ASNSP08243 561 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 ATP2A2P16615 1042 aaKnown RBP9.1□□□□□ -0.95
COL9A1-209ENST00000489861 TAP1Q03518 808 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 PUM3Q15397 648 aaKnown RBP9.1□□□□□ -0.95
COL9A1-209ENST00000489861 KCNA10Q16322 511 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 TMEM67Q5HYA8 995 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 LBX2Q6XYB7 198 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 FAM126BQ8IXS8 530 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 FAM163AQ96GL9 167 aaPredicted RBP9.1□□□□□ -0.95
COL9A1-209ENST00000489861 MAML3Q96JK9 1138 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 TSEN34Q9BSV6 310 aaKnown RBP9.1□□□□□ -0.95
COL9A1-209ENST00000489861 MOV10L1Q9BXT6 1211 aaKnown RBP9.1□□□□□ -0.95
COL9A1-209ENST00000489861 DNAJC18Q9H819 358 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 DMXL1Q9Y485 3027 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 COL4A6Q14031 1691 aa9.1□□□□□ -0.95
COL9A1-209ENST00000489861 GRXCR2A6NFK2 248 aa9.09□□□□□ -0.95
COL9A1-209ENST00000489861 SPDYE16A6NNV3 312 aaPredicted RBP9.09□□□□□ -0.95
COL9A1-209ENST00000489861 USP17L15C9J2P7 530 aa9.09□□□□□ -0.95
COL9A1-209ENST00000489861 USP17L13C9JLJ4 530 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms