RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 KANSL2Q9H9L4 492 aa25.26■■□□□ 1.63
LIME1-207ENST00000489212 MKI67P46013 3256 aaKnown RBP25.25■■□□□ 1.63
LIME1-207ENST00000489212 ERVK-9P63128 1117 aa25.25■■□□□ 1.63
LIME1-207ENST00000489212 ERVK-24P63145 666 aa25.25■■□□□ 1.63
LIME1-207ENST00000489212 NMIQ13287 307 aaPredicted RBP25.25■■□□□ 1.63
LIME1-207ENST00000489212 TICAM2Q86XR7 235 aa25.25■■□□□ 1.63
LIME1-207ENST00000489212 VCPKMTQ9H867 229 aa25.25■■□□□ 1.63
LIME1-207ENST00000489212 RLFQ13129 1914 aa25.25■■□□□ 1.63
LIME1-207ENST00000489212 PLXNB2O15031 1838 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 SPDYE16A6NNV3 312 aaPredicted RBP25.24■■□□□ 1.63
LIME1-207ENST00000489212 ATP2B2Q01814 1243 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 PPARAQ07869 468 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 MTFR1Q15390 333 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 MCMDC2Q4G0Z9 681 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 ZNF589Q86UQ0 364 aaPredicted RBP25.24■■□□□ 1.63
LIME1-207ENST00000489212 SPICE1Q8N0Z3 855 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 PORCNQ9H237 461 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 GJD2Q9UKL4 321 aa25.24■■□□□ 1.63
LIME1-207ENST00000489212 ADCY3O60266 1144 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 IRF5Q13568 498 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 LBX2Q6XYB7 198 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 SLAIN1Q8ND83 568 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 LPAR1Q92633 364 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 SH2D4AQ9H788 454 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 RABGAP1Q9Y3P9 1069 aa25.23■■□□□ 1.63
LIME1-207ENST00000489212 IGKV6D-41A0A0C4DH26 115 aa25.22■■□□□ 1.63
LIME1-207ENST00000489212 ELNP15502 786 aa25.22■■□□□ 1.63
LIME1-207ENST00000489212 EN2P19622 333 aaPredicted RBP25.22■■□□□ 1.63
LIME1-207ENST00000489212 SDSP20132 328 aa25.22■■□□□ 1.63
LIME1-207ENST00000489212 TANGO6Q9C0B7 1094 aa25.22■■□□□ 1.63
LIME1-207ENST00000489212 BTBD7Q9P203 1132 aa25.22■■□□□ 1.63
LIME1-207ENST00000489212 PDE4DIPQ5VU43 2346 aa25.21■■□□□ 1.63
LIME1-207ENST00000489212 ZNF444Q8N0Y2 327 aaPredicted RBP25.21■■□□□ 1.63
LIME1-207ENST00000489212 TMEM106CQ9BVX2 250 aa25.21■■□□□ 1.63
LIME1-207ENST00000489212 TACC3Q9Y6A5 838 aa25.21■■□□□ 1.63
LIME1-207ENST00000489212 CTDSPL2Q05D32 466 aa25.2■■□□□ 1.62
LIME1-207ENST00000489212 COG2Q14746 738 aa25.2■■□□□ 1.62
LIME1-207ENST00000489212 ALX1Q15699 326 aa25.2■■□□□ 1.62
LIME1-207ENST00000489212 PXYLP1Q8TE99 480 aa25.2■■□□□ 1.62
LIME1-207ENST00000489212 ZNF287Q9HBT7 754 aa25.2■■□□□ 1.62
LIME1-207ENST00000489212 INCENPQ9NQS7 918 aa25.2■■□□□ 1.62
LIME1-207ENST00000489212 PARP14Q460N5 1801 aa25.19■■□□□ 1.62
LIME1-207ENST00000489212 WDR46O15213 610 aaKnown RBP25.19■■□□□ 1.62
LIME1-207ENST00000489212 MAPK4P31152 587 aa25.19■■□□□ 1.62
LIME1-207ENST00000489212 PDE4BQ07343 736 aa25.19■■□□□ 1.62
LIME1-207ENST00000489212 NYAP2Q9P242 653 aa25.19■■□□□ 1.62
LIME1-207ENST00000489212 BIN2Q9UBW5 565 aaPredicted RBP25.19■■□□□ 1.62
LIME1-207ENST00000489212 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.19■■□□□ 1.62
LIME1-207ENST00000489212 CCDC171Q6TFL3 1326 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 A0A0G2JMZ2 1700 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 SLC3A2P08195 630 aaKnown RBP25.18■■□□□ 1.62
LIME1-207ENST00000489212 HSPD1P10809 573 aaKnown RBP25.18■■□□□ 1.62
LIME1-207ENST00000489212 FAM47AQ5JRC9 791 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 GPR142Q7Z601 462 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 CEP95Q96GE4 821 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 HOXC10Q9NYD6 342 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 PLIN4Q96Q06 1357 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 MYH4Q9Y623 1939 aa25.18■■□□□ 1.62
LIME1-207ENST00000489212 FLOT1O75955 427 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 FGAP02671 866 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 INHAP05111 366 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 CCL5P13501 91 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 DSG3P32926 999 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 NEDD1Q8NHV4 660 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 GOPCQ9HD26 462 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 MTMR4Q9NYA4 1195 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 ANAPC4Q9UJX5 808 aa25.17■■□□□ 1.62
LIME1-207ENST00000489212 GSPT1P15170 499 aaKnown RBP25.16■■□□□ 1.62
LIME1-207ENST00000489212 UBXN2AP68543 259 aa25.16■■□□□ 1.62
LIME1-207ENST00000489212 TFAP4Q01664 338 aa25.16■■□□□ 1.62
LIME1-207ENST00000489212 PLEKHH3Q7Z736 793 aa25.16■■□□□ 1.62
LIME1-207ENST00000489212 ATG4CQ96DT6 458 aa25.16■■□□□ 1.62
LIME1-207ENST00000489212 CLIP2Q9UDT6 1046 aa25.16■■□□□ 1.62
LIME1-207ENST00000489212 RAD21O60216 631 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 TSPY3P0CV98 308 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 TSPY8P0CW00 308 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 CYP2B6P20813 491 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 CCNA1P78396 465 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 MORN1Q5T089 497 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 FAM83BQ5T0W9 1011 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 TTC22Q5TAA0 569 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 CWC27Q6UX04 472 aaKnown RBP25.15■■□□□ 1.62
LIME1-207ENST00000489212 CCAR1Q8IX12 1150 aaKnown RBP25.15■■□□□ 1.62
LIME1-207ENST00000489212 USP6NLQ92738 828 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 NUDT12Q9BQG2 462 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 UNC93B1Q9H1C4 597 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 FBXO28Q9NVF7 368 aa25.15■■□□□ 1.62
LIME1-207ENST00000489212 SOCS4Q8WXH5 440 aa25.14■■□□□ 1.62
LIME1-207ENST00000489212 MKL1Q969V6 931 aa25.14■■□□□ 1.62
LIME1-207ENST00000489212 NUP88Q99567 741 aaPredicted RBP25.14■■□□□ 1.62
LIME1-207ENST00000489212 RNF208Q9H0X6 261 aa25.14■■□□□ 1.62
LIME1-207ENST00000489212 ZMYM6O95789 1325 aa25.13■■□□□ 1.61
LIME1-207ENST00000489212 F5H6K3 240 aa25.13■■□□□ 1.61
LIME1-207ENST00000489212 NDUFB10O96000 172 aa25.13■■□□□ 1.61
LIME1-207ENST00000489212 KLRC3Q07444 240 aa25.13■■□□□ 1.61
LIME1-207ENST00000489212 SAMD1Q6SPF0 538 aaPredicted RBP25.13■■□□□ 1.61
LIME1-207ENST00000489212 SHISA4Q96DD7 197 aa25.13■■□□□ 1.61
LIME1-207ENST00000489212 MOV10L1Q9BXT6 1211 aaKnown RBP25.13■■□□□ 1.61
LIME1-207ENST00000489212 DIAPH3Q9NSV4 1193 aa25.13■■□□□ 1.61
LIME1-207ENST00000489212 TTLL1O95922 423 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms