RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 PHF24Q9UPV7 400 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 SMCHD1A6NHR9 2005 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 FLT1P17948 1338 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 CDK5RAP2Q96SN8 1893 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 SIPA1L1O43166 1804 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 GRXCR1A8MXD5 290 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 VCAM1P19320 739 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 PBX2P40425 430 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 PLS1Q14651 629 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 LBX2Q6XYB7 198 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL17A1-207ENST00000488320 MOV10L1Q9BXT6 1211 aaKnown RBP11.38□□□□□ -0.59
COL17A1-207ENST00000488320 PBX4Q9BYU1 374 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 CABP5Q9NP86 173 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 HOXC10Q9NYD6 342 aa11.38□□□□□ -0.59
COL17A1-207ENST00000488320 SPDYE16A6NNV3 312 aaPredicted RBP11.37□□□□□ -0.59
COL17A1-207ENST00000488320 COBLO75128 1261 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 PGK1P00558 417 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 TIMP1P01033 207 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 ERCC3P19447 782 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 PPP4CP60510 307 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 FAAP100Q0VG06 881 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 PPIGQ13427 754 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL17A1-207ENST00000488320 COG2Q14746 738 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 CERKLQ49MI3 558 aaPredicted RBP11.37□□□□□ -0.59
COL17A1-207ENST00000488320 NCAPG2Q86XI2 1143 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 MICALL1Q8N3F8 863 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 ACER1Q8TDN7 264 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 SSH1Q8WYL5 1049 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 NECAB3Q96P71 396 aaPredicted RBP11.37□□□□□ -0.59
COL17A1-207ENST00000488320 SPATC1LQ9H0A9 340 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 MRS2Q9HD23 443 aa11.37□□□□□ -0.59
COL17A1-207ENST00000488320 A0A1W2PQ45 241 aaPredicted RBP11.36□□□□□ -0.59
COL17A1-207ENST00000488320 A0A1W2PQY0 241 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 APBB1O00213 710 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 IGHA2P01877 340 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 UQCRFS1P1P0C7P4 283 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 ADGRE1Q14246 886 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 SKIV2LQ15477 1246 aaKnown RBP11.36□□□□□ -0.59
COL17A1-207ENST00000488320 ABCB5Q2M3G0 1257 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 MAML3Q96JK9 1138 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 TOX2Q96NM4 488 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 KIAA1683Q9H0B3 1180 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 STARD7Q9NQZ5 370 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 SNRKQ9NRH2 765 aa11.36□□□□□ -0.59
COL17A1-207ENST00000488320 ARIH1Q9Y4X5 557 aaPredicted RBP11.36□□□□□ -0.59
COL17A1-207ENST00000488320 ZNFX1Q9P2E3 1918 aaKnown RBP11.35□□□□□ -0.59
COL17A1-207ENST00000488320 ARID4AP29374 1257 aaPredicted RBP11.35□□□□□ -0.59
COL17A1-207ENST00000488320 MCAMP43121 646 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 USP5P45974 858 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 RAB30Q15771 203 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 AAK1Q2M2I8 961 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 TMEM240Q5SV17 173 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 MFSD5Q6N075 450 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 TATDN1Q6P1N9 297 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 SAMD1Q6SPF0 538 aaPredicted RBP11.35□□□□□ -0.59
COL17A1-207ENST00000488320 TMEM199Q8N511 208 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 SHCBP1Q8NEM2 672 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 NUP133Q8WUM0 1156 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 VTI1AQ96AJ9 217 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 LRFN3Q9BTN0 628 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 TANGO6Q9C0B7 1094 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 MROH8Q9H579 483 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 SLC28A3Q9HAS3 691 aa11.35□□□□□ -0.59
COL17A1-207ENST00000488320 SRGAP3O43295 1099 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 ACRP10323 421 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 FCER1AP12319 257 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 BMP1P13497 986 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 DYNLL1P63167 89 aaKnown RBP11.34□□□□□ -0.59
COL17A1-207ENST00000488320 TTC39AQ5SRH9 613 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 ZNF365Q70YC5 407 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 ANKRD33Q7Z3H0 272 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 NKX2-4Q9H2Z4 354 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 CXXC1Q9P0U4 656 aaPredicted RBP11.34□□□□□ -0.59
COL17A1-207ENST00000488320 SERPINB13Q9UIV8 391 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 MYH1P12882 1939 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 SYNGAP1Q96PV0 1343 aa11.34□□□□□ -0.59
COL17A1-207ENST00000488320 NCOR1O75376 2440 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 MPHOSPH10O00566 681 aaKnown RBP11.33□□□□□ -0.6
COL17A1-207ENST00000488320 CSF2RAP15509 400 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 ACLYP53396 1101 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 TFF2Q03403 129 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 G3BP1Q13283 466 aaKnown RBP eCLIP11.33□□□□□ -0.6
COL17A1-207ENST00000488320 TMEM31Q5JXX7 168 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 PSRC1Q6PGN9 363 aaPredicted RBP11.33□□□□□ -0.6
COL17A1-207ENST00000488320 C16orf59Q7L2K0 433 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 ADGRA1Q86SQ6 560 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 TTC6Q86TZ1 520 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 ABRAQ8N0Z2 381 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 MB21D1Q8N884 522 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 MMP19Q99542 508 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 TSEN34Q9BSV6 310 aaKnown RBP11.33□□□□□ -0.6
COL17A1-207ENST00000488320 MTIF3Q9H2K0 278 aaKnown RBP11.33□□□□□ -0.6
COL17A1-207ENST00000488320 EPHX3Q9H6B9 360 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 NRBP1Q9UHY1 535 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 MROH7Q68CQ1 1323 aa11.33□□□□□ -0.6
COL17A1-207ENST00000488320 FOCADQ5VW36 1801 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 AKR1A1P14550 325 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 DSG3P32926 999 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 KCNA10Q16322 511 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms