RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CALM2P0DP24 149 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 CALM3P0DP25 149 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 SHROOM1Q2M3G4 852 aaPredicted RBP16.49■□□□□ 0.23
CUX1-209ENST00000487284 CERKLQ49MI3 558 aaPredicted RBP16.49■□□□□ 0.23
CUX1-209ENST00000487284 RCSD1Q6JBY9 416 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 FANCBQ8NB91 859 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 ANKS1AQ92625 1134 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 TCP11L1Q9NUJ3 509 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 PLIN4Q96Q06 1357 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 GDF11O95390 407 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 FMNL1O95466 1100 aaPredicted RBP16.48■□□□□ 0.23
CUX1-209ENST00000487284 MBD3O95983 291 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 KRT85P78386 507 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 TROAPQ12815 778 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 CSPP1Q1MSJ5 1256 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 CCDC178Q5BJE1 867 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 CATIPQ7Z7H3 387 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 LDHDQ86WU2 507 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 FBXO18Q8NFZ0 1043 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 NEDD1Q8NHV4 660 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 GPT2Q8TD30 523 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 C8orf76Q96K31 380 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.48■□□□□ 0.23
CUX1-209ENST00000487284 GDPD2Q9HCC8 539 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 IL17RBQ9NRM6 502 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 FZD1Q9UP38 647 aa16.48■□□□□ 0.23
CUX1-209ENST00000487284 MPHOSPH10O00566 681 aaKnown RBP16.47■□□□□ 0.23
CUX1-209ENST00000487284 JAG1P78504 1218 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 SUPT20HL1Q3ZLR7 823 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 DGKHQ86XP1 1220 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 PHKBQ93100 1093 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 CDCA5Q96FF9 252 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 CCDC17Q96LX7 622 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 FIBPO43427 364 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 NCLP19338 710 aaKnown RBP16.47■□□□□ 0.23
CUX1-209ENST00000487284 FOSBP53539 338 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 SSRP1Q08945 709 aaKnown RBP16.47■□□□□ 0.23
CUX1-209ENST00000487284 DCAF15Q66K64 600 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 FAM173BQ6P4H8 233 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 NBPF11Q86T75 865 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 CLEC10AQ8IUN9 316 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 NUP133Q8WUM0 1156 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 HOOK2Q96ED9 719 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 ALG1Q9BT22 464 aa16.47■□□□□ 0.23
CUX1-209ENST00000487284 GPBP1L1Q9HC44 474 aaPredicted RBP16.47■□□□□ 0.23
CUX1-209ENST00000487284 RBM28Q9NW13 759 aaKnown RBP16.47■□□□□ 0.23
CUX1-209ENST00000487284 ELP1O95163 1332 aa16.46■□□□□ 0.23
CUX1-209ENST00000487284 PHF20L1A8MW92 1017 aa16.46■□□□□ 0.23
CUX1-209ENST00000487284 GUCY1B3Q02153 619 aa16.46■□□□□ 0.23
CUX1-209ENST00000487284 ABCB5Q2M3G0 1257 aa16.46■□□□□ 0.23
CUX1-209ENST00000487284 CEP95Q96GE4 821 aa16.46■□□□□ 0.23
CUX1-209ENST00000487284 ZNF341Q9BYN7 854 aa16.46■□□□□ 0.23
CUX1-209ENST00000487284 GZF1Q9H116 711 aaPredicted RBP16.46■□□□□ 0.23
CUX1-209ENST00000487284 OTOFQ9HC10 1997 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 IGKV6D-41A0A0C4DH26 115 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 TRAF5O00463 557 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 GADD45BO75293 160 aaPredicted RBP16.45■□□□□ 0.22
CUX1-209ENST00000487284 GH2P01242 217 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 FMR1Q06787 632 aaKnown RBP eCLIP16.45■□□□□ 0.22
CUX1-209ENST00000487284 PRKG1Q13976 671 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 TRIM22Q8IYM9 498 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 WASF1Q92558 559 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 SLC26A6Q9BXS9 759 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 RNF26Q9BY78 433 aaPredicted RBP16.45■□□□□ 0.22
CUX1-209ENST00000487284 SCAND2PQ9GZW5 306 aaPredicted RBP16.45■□□□□ 0.22
CUX1-209ENST00000487284 DOCK1Q14185 1865 aa16.45■□□□□ 0.22
CUX1-209ENST00000487284 PAPPA2Q9BXP8 1791 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 INPP5BP32019 993 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 GUCY1A2P33402 732 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 CAP2P40123 477 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 FUT2Q10981 343 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 SEPT2Q15019 361 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 ATL3Q6DD88 541 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 TMEM179Q6ZVK1 233 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 AIFM3Q96NN9 605 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 MAP3K14Q99558 947 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.44■□□□□ 0.22
CUX1-209ENST00000487284 ZBTB21Q9ULJ3 1066 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 STX8Q9UNK0 236 aa16.44■□□□□ 0.22
CUX1-209ENST00000487284 BAZ2BQ9UIF8 2168 aaKnown RBP16.44■□□□□ 0.22
CUX1-209ENST00000487284 DEXIO95424 95 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 UBE2HP62256 183 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 OTUD7BQ6GQQ9 843 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 KLRG1Q96E93 195 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 WRNIP1Q96S55 665 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 KAT14Q9H8E8 782 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 CABP5Q9NP86 173 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 GJB4Q9NTQ9 266 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 MTMR4Q9NYA4 1195 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 ZNF112Q9UJU3 913 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 USP2O75604 605 aaPredicted RBP16.43■□□□□ 0.22
CUX1-209ENST00000487284 NF2P35240 595 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 NOVP48745 357 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 KRT40Q6A162 431 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 TMTC3Q6ZXV5 915 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 BRAPQ7Z569 592 aa16.43■□□□□ 0.22
CUX1-209ENST00000487284 CTCFLQ8NI51 663 aaPredicted RBP16.43■□□□□ 0.22
CUX1-209ENST00000487284 KIF3CO14782 793 aa16.42■□□□□ 0.22
CUX1-209ENST00000487284 CTNND1O60716 968 aaKnown RBP16.42■□□□□ 0.22
CUX1-209ENST00000487284 DEKP35659 375 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms