RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 FMNL1O95466 1100 aaPredicted RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 TOP1P11387 765 aaKnown RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 FDPSP14324 419 aaKnown RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 AKR1B1P15121 316 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 XBP1P17861 261 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 SHMT1P34896 483 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 TROAPQ12815 778 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 GNL2Q13823 731 aaKnown RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 NTRK3Q16288 839 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 SKOR2Q2VWA4 1001 aaPredicted RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 RCSD1Q6JBY9 416 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 DPY19L2Q6NUT2 758 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 FERMT3Q86UX7 667 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 FAM83AQ86UY5 434 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 CCDC82Q8N4S0 544 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 RGS22Q8NE09 1264 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 CEP95Q96GE4 821 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 TMEM47Q9BQJ4 181 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.06□□□□□ -0.64
CTSA-208ENST00000485627 CABP5Q9NP86 173 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 FAM217BQ9NTX9 383 aaPredicted RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 HERC5Q9UII4 1024 aaKnown RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 ZNF646O15015 1829 aaPredicted RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 FOCADQ5VW36 1801 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 DDX60LQ5H9U9 1706 aaKnown RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 CDK5RAP2Q96SN8 1893 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 PASKQ96RG2 1323 aa11.06□□□□□ -0.64
CTSA-208ENST00000485627 COL2A1P02458 1487 aaPredicted RBP11.06□□□□□ -0.64
CTSA-208ENST00000485627 ATRNL1Q5VV63 1379 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 PLIN4Q96Q06 1357 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 TTLL1O95922 423 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 KRT85P78386 507 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 GUCY1B3Q02153 619 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 SAFBQ15424 915 aaKnown RBP eCLIP11.05□□□□□ -0.64
CTSA-208ENST00000485627 TMTC3Q6ZXV5 915 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 SH3BP5LQ7L8J4 393 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 GPC2Q8N158 579 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 ZBED3Q96IU2 234 aaPredicted RBP11.05□□□□□ -0.64
CTSA-208ENST00000485627 RNF26Q9BY78 433 aaPredicted RBP11.05□□□□□ -0.64
CTSA-208ENST00000485627 MTMR4Q9NYA4 1195 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 RBM27Q9P2N5 1060 aaKnown RBP11.05□□□□□ -0.64
CTSA-208ENST00000485627 MTMR7Q9Y216 660 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 ZNF541Q9H0D2 1346 aa11.05□□□□□ -0.64
CTSA-208ENST00000485627 PRPF40AO75400 957 aaKnown RBP11.04□□□□□ -0.64
CTSA-208ENST00000485627 ATP2B2Q01814 1243 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 GRM4Q14833 912 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 ABCB5Q2M3G0 1257 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 KIF4BQ2VIQ3 1234 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 NBPF9Q3BBW0 867 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 TBC1D10BQ4KMP7 808 aaPredicted RBP11.04□□□□□ -0.64
CTSA-208ENST00000485627 METTL16Q86W50 562 aaKnown RBP11.04□□□□□ -0.64
CTSA-208ENST00000485627 FBXO18Q8NFZ0 1043 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 LZTS2Q9BRK4 669 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 CLIP2Q9UDT6 1046 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 TSKSQ9UJT2 592 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 ECM29Q5VYK3 1845 aa11.04□□□□□ -0.64
CTSA-208ENST00000485627 IGKV6D-41A0A0C4DH26 115 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 SHTN1A0MZ66 631 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 FAM196BA6NMK8 535 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 PRPF3O43395 683 aaKnown RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 TRAK2O60296 914 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 PLEKHA8P1O95397 391 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 ITGBL1O95965 494 aaPredicted RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 PARP1P09874 1014 aaKnown RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 LMOD1P29536 600 aaPredicted RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 MLLT1Q03111 559 aaPredicted RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 FMR1Q06787 632 aaKnown RBP eCLIP11.03□□□□□ -0.64
CTSA-208ENST00000485627 RESTQ13127 1097 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 EAPPQ56P03 285 aaPredicted RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 TATDN1Q6P1N9 297 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 TMEM179Q6ZVK1 233 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 SAMD7Q7Z3H4 446 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 NBPF11Q86T75 865 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 CMTR1Q8N1G2 835 aaKnown RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 ZNF396Q96N95 335 aaPredicted RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 KANSL2Q9H9L4 492 aa11.03□□□□□ -0.64
CTSA-208ENST00000485627 V9GY48 417 aaPredicted RBP11.03□□□□□ -0.64
CTSA-208ENST00000485627 TMEM88BA6NKF7 163 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 GDF11O95390 407 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 NOVP48745 357 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 ICA1Q05084 483 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 DNM1Q05193 864 aaKnown RBP11.02□□□□□ -0.65
CTSA-208ENST00000485627 RASA3Q14644 834 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 KRT40Q6A162 431 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 ATL3Q6DD88 541 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 OTUD7BQ6GQQ9 843 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 BRAPQ7Z569 592 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 SRBD1Q8N5C6 995 aaKnown RBP11.02□□□□□ -0.65
CTSA-208ENST00000485627 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.02□□□□□ -0.65
CTSA-208ENST00000485627 TMEM39BQ9GZU3 492 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 SCAND2PQ9GZW5 306 aaPredicted RBP11.02□□□□□ -0.65
CTSA-208ENST00000485627 TAF1DQ9H5J8 278 aaPredicted RBP11.02□□□□□ -0.65
CTSA-208ENST00000485627 DNAJC18Q9H819 358 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 BRMS1Q9HCU9 246 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 NYAP2Q9P242 653 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 CFAP45Q9UL16 551 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 CNPY2Q9Y2B0 182 aa11.02□□□□□ -0.65
CTSA-208ENST00000485627 DDX49Q9Y6V7 483 aaKnown RBP11.02□□□□□ -0.65
CTSA-208ENST00000485627 FIBPO43427 364 aa11.01□□□□□ -0.65
CTSA-208ENST00000485627 TBC1D12O60347 775 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms