RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 CAVIN4Q5BKX8 364 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 TMTC3Q6ZXV5 915 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 PPFIBP1Q86W92 1011 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 SHISA4Q96DD7 197 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 TUBB2BQ9BVA1 445 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 ABCF2Q9UG63 623 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 V9GY48 417 aaPredicted RBP20.55■□□□□ 0.88
CCM2-209ENST00000477605 RREB1Q92766 1687 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 LAMB2P55268 1798 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 TAF3Q5VWG9 929 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 CLEC4GQ6UXB4 293 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 TOGARAM2Q6ZUX3 1019 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 SYMPKQ92797 1274 aaKnown RBP20.55■□□□□ 0.88
CCM2-209ENST00000477605 ADD3Q9UEY8 706 aaKnown RBP20.55■□□□□ 0.88
CCM2-209ENST00000477605 MRFAP1Q9Y605 127 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 SYNRGQ9UMZ2 1314 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 ORC4O43929 436 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 TRIM37O94972 964 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 ATP2C1P98194 919 aaPredicted RBP20.54■□□□□ 0.88
CCM2-209ENST00000477605 SF3B3Q15393 1217 aaKnown RBP20.54■□□□□ 0.88
CCM2-209ENST00000477605 TTC38Q5R3I4 469 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 ANKRD18AQ8IVF6 992 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 EPSTI1Q96J88 318 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 BSDC1Q9NW68 430 aaPredicted RBP20.54■□□□□ 0.88
CCM2-209ENST00000477605 PDS5AQ29RF7 1337 aaKnown RBP20.54■□□□□ 0.88
CCM2-209ENST00000477605 ITIH6Q6UXX5 1313 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 DUOX1Q9NRD9 1551 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 PNMA6AP0CW24 399 aaPredicted RBP20.54■□□□□ 0.88
CCM2-209ENST00000477605 BAG6P46379 1132 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 TUBB4BP68371 445 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 KIFC2Q96AC6 838 aa20.54■□□□□ 0.88
CCM2-209ENST00000477605 CICQ96RK0 1608 aaPredicted RBP20.53■□□□□ 0.88
CCM2-209ENST00000477605 TNS1Q9HBL0 1735 aaKnown RBP20.53■□□□□ 0.88
CCM2-209ENST00000477605 A0A087X0B3 334 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 LOC102724428A0A0B4J2F2 783 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 RGL2O15211 777 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 SIK1P57059 783 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 HSP90AA4PQ58FG1 418 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 IQUBQ8NA54 791 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 WDR24Q96S15 920 aa20.53■□□□□ 0.88
CCM2-209ENST00000477605 PPP1R3GB7ZBB8 358 aa20.52■□□□□ 0.88
CCM2-209ENST00000477605 FECHP22830 423 aa20.52■□□□□ 0.88
CCM2-209ENST00000477605 SPAG1Q07617 926 aa20.52■□□□□ 0.88
CCM2-209ENST00000477605 JAKMIP3Q5VZ66 844 aa20.52■□□□□ 0.88
CCM2-209ENST00000477605 RSRC2Q7L4I2 434 aaKnown RBP20.52■□□□□ 0.88
CCM2-209ENST00000477605 IGSF22Q8N9C0 903 aa20.52■□□□□ 0.88
CCM2-209ENST00000477605 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.52■□□□□ 0.88
CCM2-209ENST00000477605 LRRC10BA6NIK2 292 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 AFMP43652 599 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 PPP2R3AQ06190 1150 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 NPY5RQ15761 445 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 CTR9Q6PD62 1173 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 CNGA4Q8IV77 575 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 CTCFLQ8NI51 663 aaPredicted RBP20.52■□□□□ 0.87
CCM2-209ENST00000477605 RABGGTAQ92696 567 aa20.52■□□□□ 0.87
CCM2-209ENST00000477605 FAM205CA6NFA0 338 aa20.51■□□□□ 0.87
CCM2-209ENST00000477605 ZBTB22O15209 634 aa20.51■□□□□ 0.87
CCM2-209ENST00000477605 PLEKHA8P1O95397 391 aa20.51■□□□□ 0.87
CCM2-209ENST00000477605 CD44P16070 742 aaKnown RBP20.51■□□□□ 0.87
CCM2-209ENST00000477605 PTPN21Q16825 1174 aa20.51■□□□□ 0.87
CCM2-209ENST00000477605 EARS2Q5JPH6 523 aaKnown RBP20.51■□□□□ 0.87
CCM2-209ENST00000477605 IQSEC3Q9UPP2 1182 aaPredicted RBP20.51■□□□□ 0.87
CCM2-209ENST00000477605 GYG1P46976 350 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 EN1Q05925 392 aaPredicted RBP20.5■□□□□ 0.87
CCM2-209ENST00000477605 MARCH10Q8NA82 808 aaPredicted RBP20.5■□□□□ 0.87
CCM2-209ENST00000477605 LIMA1Q9UHB6 759 aaKnown RBP20.5■□□□□ 0.87
CCM2-209ENST00000477605 ADGRG1Q9Y653 693 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 CNTNAP5Q8WYK1 1306 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 IGSF3O75054 1194 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 MFAP3LO75121 409 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 E2F4Q16254 413 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 ARL6IP4Q66PJ3 421 aaKnown RBP20.5■□□□□ 0.87
CCM2-209ENST00000477605 RMND1Q9NWS8 449 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 RWDD2AQ9UIY3 292 aa20.5■□□□□ 0.87
CCM2-209ENST00000477605 TEX33O43247 280 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 GTPBP6O43824 516 aaPredicted RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 RBL2Q08999 1139 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 PTGDRQ13258 359 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 SEMA3FQ13275 785 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 TRIM14Q14142 442 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 ZNF174Q15697 407 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 RASGRP2Q7LDG7 609 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 FBXO33Q7Z6M2 555 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 FAM177A1Q8N128 213 aaPredicted RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 GOLGA1Q92805 767 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 SMARCC1Q92922 1105 aaPredicted RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 ATP8A2Q9NTI2 1148 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 DOT1LQ8TEK3 1739 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 COL1A1P02452 1464 aaPredicted RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 PRDM1O75626 825 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 SCG2P13521 617 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 DYNLL1P63167 89 aaKnown RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 ITPK1Q13572 414 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 SBK1Q52WX2 424 aa20.49■□□□□ 0.87
CCM2-209ENST00000477605 FAM84BQ96KN1 310 aaPredicted RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 CRNKL1Q9BZJ0 848 aaKnown RBP20.49■□□□□ 0.87
CCM2-209ENST00000477605 KIF5CO60282 957 aa20.48■□□□□ 0.87
CCM2-209ENST00000477605 CALML3P27482 149 aa20.48■□□□□ 0.87
CCM2-209ENST00000477605 KLHL10Q6JEL2 608 aa20.48■□□□□ 0.87
CCM2-209ENST00000477605 TMTC1Q8IUR5 882 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms