RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 COL6A1P12109 1028 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CCNA1P78396 465 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 GRB14Q14449 540 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 COG2Q14746 738 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 TMEM179Q6ZVK1 233 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 LRRCC1Q9C099 1032 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 NBPF3Q9H094 633 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 HOXC10Q9NYD6 342 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 FLRT1Q9NZU1 646 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 FRMPD3Q5JV73 1810 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PFASO15067 1338 aa14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 MBD4O95243 580 aa14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 ZKSCAN1P17029 563 aaPredicted RBP14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CCND3P30281 292 aaPredicted RBP14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 GDF15Q99988 308 aa14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PUS7LQ9H0K6 701 aaKnown RBP14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 DCTPP1Q9H773 170 aa14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 TMX2Q9Y320 296 aa14.79□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 GREB1LQ9C091 1923 aaPredicted RBP14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 ZNF236Q9UL36 1845 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 USP17L12C9JPN9 530 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 USP17L21D6R901 530 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 AKR1B1P15121 316 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 BMP8BP34820 402 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CDK8P49336 464 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 C16orf86Q6ZW13 317 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 NPLOC4Q8TAT6 608 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CCDC17Q96LX7 622 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.78□□□□□ -0.043e-10■■■□□ 17.3
MSH5-SAPCD1-205ENST00000476085 ADAMTS5Q9UNA0 930 aa14.78□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CYP2D7A0A087X1C5 515 aa14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SMARCA5O60264 1052 aaPredicted RBP14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 GLRX3O76003 335 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 DSG3P32926 999 aa14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 CTR9Q6PD62 1173 aa14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 CCAR1Q8IX12 1150 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SHCBP1Q8NEM2 672 aa14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 LPAR1Q92633 364 aa14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 MOV10L1Q9BXT6 1211 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 C11orf49Q9H6J7 331 aa14.77□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SMCHD1A6NHR9 2005 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 MPHOSPH10O00566 681 aaKnown RBP14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 STRNO43815 780 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 CLEC10AQ8IUN9 316 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 MB21D1Q8N884 522 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 STRBPQ96SI9 672 aaKnown RBP14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SPATC1LQ9H0A9 340 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 VCPKMTQ9H867 229 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 STAP2Q9UGK3 403 aa14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 COL11A1P12107 1806 aaPredicted RBP14.76□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SBK1Q52WX2 424 aa14.75□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ZSCAN25Q6NSZ9 544 aa14.75□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 KBTBD3Q8NAB2 608 aa14.75□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 TRPV1Q8NER1 839 aa14.75□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ECHDC1Q9NTX5 307 aa14.75□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 COL6A3P12111 3177 aa14.75□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 GSG1L2A8MUP6 293 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 COBLO75128 1261 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ERCC3P19447 782 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ICA1Q05084 483 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 MFSD14CQ5VZR4 134 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 OLFML2BQ68BL8 750 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 GIMAP6Q6P9H5 292 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 OSBP2Q969R2 916 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 KANSL2Q9H9L4 492 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ARHGEF10LQ9HCE6 1279 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SLC4A4Q9Y6R1 1079 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 IVNS1ABPQ9Y6Y0 642 aa14.74□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SOX1O00570 391 aaPredicted RBP14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 WDR46O15213 610 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 CYBAP13498 195 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 EEF2P13639 858 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ADORA2AP29274 412 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ATP2B2Q01814 1243 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 C7orf61Q8IZ16 206 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ABRAQ8N0Z2 381 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ATG4CQ96DT6 458 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 TANGO6Q9C0B7 1094 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 BCL11AQ9H165 835 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SH2D4AQ9H788 454 aa14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 DDX20Q9UHI6 824 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 LAMA2P24043 3122 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 MSCO60682 206 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 CYP2C19P33261 490 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 TMEM132BQ14DG7 1078 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 LRRC26Q2I0M4 334 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 SPICE1Q8N0Z3 855 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 REPS2Q8NFH8 660 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 MROH8Q9H579 483 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ARPP21Q9UBL0 812 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ZMYND8Q9ULU4 1186 aaPredicted RBP14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 ROBO3Q96MS0 1386 aa14.72□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 RNF113AO15541 343 aaKnown RBP14.71□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 FLOT1O75955 427 aa14.71□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 RASA1P20936 1047 aa14.71□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 WDR78Q5VTH9 848 aa14.71□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 DPP9Q86TI2 863 aa14.71□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 AMOTL1Q8IY63 956 aa14.71□□□□□ -0.05
MSH5-SAPCD1-205ENST00000476085 APPBP2Q92624 585 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms