RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SHMT1P34896 483 aa22.5■■□□□ 1.19
SHH-205ENST00000472308 GRIN2CQ14957 1233 aa22.5■■□□□ 1.19
SHH-205ENST00000472308 ZNF512BQ96KM6 892 aaPredicted RBP22.5■■□□□ 1.19
SHH-205ENST00000472308 RNPC3Q96LT9 517 aaKnown RBP22.5■■□□□ 1.19
SHH-205ENST00000472308 GPR108Q9NPR9 543 aa22.5■■□□□ 1.19
SHH-205ENST00000472308 STRNO43815 780 aa22.49■■□□□ 1.19
SHH-205ENST00000472308 IGSF3O75054 1194 aa22.49■■□□□ 1.19
SHH-205ENST00000472308 ERCC3P19447 782 aa22.49■■□□□ 1.19
SHH-205ENST00000472308 CCDC158Q5M9N0 1113 aa22.49■■□□□ 1.19
SHH-205ENST00000472308 ARHGAP45Q92619 1136 aa22.49■■□□□ 1.19
SHH-205ENST00000472308 SPATC1LQ9H0A9 340 aa22.49■■□□□ 1.19
SHH-205ENST00000472308 CHD9Q3L8U1 2897 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 A0A1W2PRG0 241 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 GNAI2P04899 355 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 USP5P45974 858 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 RARSP54136 660 aaKnown RBP22.48■■□□□ 1.19
SHH-205ENST00000472308 TJAP1Q5JTD0 557 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 SHCBP1Q8NEM2 672 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 PHF24Q9UPV7 400 aa22.48■■□□□ 1.19
SHH-205ENST00000472308 COL9A1P20849 921 aa22.47■■□□□ 1.19
SHH-205ENST00000472308 PLCD1P51178 756 aa22.47■■□□□ 1.19
SHH-205ENST00000472308 SEPT2Q15019 361 aa22.47■■□□□ 1.19
SHH-205ENST00000472308 TNNQ9UQP3 1299 aa22.47■■□□□ 1.19
SHH-205ENST00000472308 KIAA0355O15063 1070 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 CLTBP09497 229 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 COG2Q14746 738 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 KIAA1755Q5JYT7 1200 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 MAML3Q96JK9 1138 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 CABP5Q9NP86 173 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 TLR7Q9NYK1 1049 aaKnown RBP22.46■■□□□ 1.19
SHH-205ENST00000472308 DBNLQ9UJU6 430 aaKnown RBP22.46■■□□□ 1.19
SHH-205ENST00000472308 TACC3Q9Y6A5 838 aa22.46■■□□□ 1.19
SHH-205ENST00000472308 TNFRSF10AO00220 468 aa22.45■■□□□ 1.18
SHH-205ENST00000472308 IDH1O75874 414 aaKnown RBP22.45■■□□□ 1.18
SHH-205ENST00000472308 DNAJB2P25686 324 aa22.45■■□□□ 1.18
SHH-205ENST00000472308 EVX2Q03828 476 aa22.45■■□□□ 1.18
SHH-205ENST00000472308 TTC6Q86TZ1 520 aa22.45■■□□□ 1.18
SHH-205ENST00000472308 RAPGEFL1Q9UHV5 662 aa22.45■■□□□ 1.18
SHH-205ENST00000472308 GABPAQ06546 454 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 POLA2Q14181 598 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 CERS3Q8IU89 383 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 ABRAQ8N0Z2 381 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 MAGEB6Q8N7X4 407 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 TANGO6Q9C0B7 1094 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 HOXC10Q9NYD6 342 aa22.44■■□□□ 1.18
SHH-205ENST00000472308 TRIM27P14373 513 aa22.43■■□□□ 1.18
SHH-205ENST00000472308 MROH8Q9H579 483 aa22.43■■□□□ 1.18
SHH-205ENST00000472308 XPNPEP3Q9NQH7 507 aa22.43■■□□□ 1.18
SHH-205ENST00000472308 ROBO3Q96MS0 1386 aa22.42■■□□□ 1.18
SHH-205ENST00000472308 PQBP1O60828 265 aaKnown RBP22.42■■□□□ 1.18
SHH-205ENST00000472308 RAG1P15918 1043 aa22.42■■□□□ 1.18
SHH-205ENST00000472308 FPGSQ05932 587 aa22.42■■□□□ 1.18
SHH-205ENST00000472308 RIOK1Q9BRS2 568 aaKnown RBP22.42■■□□□ 1.18
SHH-205ENST00000472308 SLC5A4Q9NY91 659 aa22.42■■□□□ 1.18
SHH-205ENST00000472308 A0A1W2PQ45 241 aaPredicted RBP22.41■■□□□ 1.18
SHH-205ENST00000472308 A0A1W2PQY0 241 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 PGK1P00558 417 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 DSG3P32926 999 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 NCAPG2Q86XI2 1143 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 MB21D1Q8N884 522 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 ATG4CQ96DT6 458 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 ZNF576Q9H609 170 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 ANTXR1Q9H6X2 564 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 XIRP2A4UGR9 3374 aa22.41■■□□□ 1.18
SHH-205ENST00000472308 RARBP10826 455 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 TAL1P17542 331 aaPredicted RBP22.4■■□□□ 1.18
SHH-205ENST00000472308 FAAP100Q0VG06 881 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 PLS1Q14651 629 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 SSH3Q8TE77 659 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 LENG1Q96BZ8 264 aaPredicted RBP22.4■■□□□ 1.18
SHH-205ENST00000472308 NRBP1Q9UHY1 535 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 NAV1Q8NEY1 1877 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 CHD7Q9P2D1 2997 aa22.4■■□□□ 1.18
SHH-205ENST00000472308 BDP1A6H8Y1 2624 aa22.39■■□□□ 1.18
SHH-205ENST00000472308 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.39■■□□□ 1.17
SHH-205ENST00000472308 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.39■■□□□ 1.17
SHH-205ENST00000472308 OS9Q13438 667 aaPredicted RBP22.39■■□□□ 1.17
SHH-205ENST00000472308 RNF180Q86T96 592 aa22.39■■□□□ 1.17
SHH-205ENST00000472308 TIFAQ96CG3 184 aa22.39■■□□□ 1.17
SHH-205ENST00000472308 CCDC8Q9H0W5 538 aaPredicted RBP22.39■■□□□ 1.17
SHH-205ENST00000472308 TMEM39AQ9NV64 488 aa22.39■■□□□ 1.17
SHH-205ENST00000472308 SMCHD1A6NHR9 2005 aa22.39■■□□□ 1.17
SHH-205ENST00000472308 PARP14Q460N5 1801 aa22.38■■□□□ 1.17
SHH-205ENST00000472308 MPHOSPH10O00566 681 aaKnown RBP22.38■■□□□ 1.17
SHH-205ENST00000472308 FCER1AP12319 257 aa22.38■■□□□ 1.17
SHH-205ENST00000472308 ANKRD33Q7Z3H0 272 aa22.38■■□□□ 1.17
SHH-205ENST00000472308 CLEC10AQ8IUN9 316 aa22.38■■□□□ 1.17
SHH-205ENST00000472308 SIAH1Q8IUQ4 282 aa22.38■■□□□ 1.17
SHH-205ENST00000472308 EAF2Q96CJ1 260 aaPredicted RBP22.38■■□□□ 1.17
SHH-205ENST00000472308 ADAMTS4O75173 837 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 SURF6O75683 361 aaKnown RBP22.37■■□□□ 1.17
SHH-205ENST00000472308 FLOT1O75955 427 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 PGK2P07205 417 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 ZNF865P0CJ78 1059 aaPredicted RBP22.37■■□□□ 1.17
SHH-205ENST00000472308 TMEM132BQ14DG7 1078 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 SPICE1Q8N0Z3 855 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 SLC44A5Q8NCS7 719 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.37■■□□□ 1.173e-6■■■■■ 30.2
SHH-205ENST00000472308 REV3LO60673 3130 aa22.37■■□□□ 1.17
SHH-205ENST00000472308 POLR3DP05423 398 aaPredicted RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms