RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 UBE2SQ16763 222 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 NUP88Q99567 741 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 SMCO2A6NFE2 343 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 TPM3P06753 285 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 IQCB1Q15051 598 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 FCHSD1Q86WN1 690 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 C2CD5Q86YS7 1000 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 TDRD7Q8NHU6 1098 aaKnown RBP15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 HPS3Q969F9 1004 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 LZTFL1Q9NQ48 299 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 ARPP21Q9UBL0 812 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 UBXN2AP68543 259 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 CACNB1Q02641 598 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 TBC1D16Q8TBP0 767 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 TANGO6Q9C0B7 1094 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 SALL1Q9NSC2 1324 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 N4BP3O15049 544 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 C21orf2O43822 256 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 TTBK2Q6IQ55 1244 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 FOXP4Q8IVH2 680 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 ATP8A2Q9NTI2 1148 aa15.61■□□□□ 0.09
CCDC88A-211ENST00000471947 KRT18P05783 430 aaKnown RBP15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 CEP135Q66GS9 1140 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 PPFIBP1Q86W92 1011 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 IL17RAQ96F46 866 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 TAB2Q9NYJ8 693 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 TROAPQ12815 778 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 ALX1Q15699 326 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 TMTC3Q6ZXV5 915 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 NFIAQ12857 509 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 PRKG1Q13976 671 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 BLIDQ8IZY5 108 aa15.6■□□□□ 0.09
CCDC88A-211ENST00000471947 ASIC1P78348 528 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 DTHD1Q6ZMT9 781 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 MIGA2Q7L4E1 593 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 LRRC8AQ8IWT6 810 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 KIAA1524Q8TCG1 905 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 ZNF500O60304 480 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 TPM2P07951 284 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 MAN1B1Q9UKM7 699 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 PNPLA7Q6ZV29 1317 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 AKR1B1P15121 316 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 HS1BP3Q53T59 392 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 SLC30A10Q6XR72 485 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 ZNF512BQ96KM6 892 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 HINFPQ9BQA5 517 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 RNF26Q9BY78 433 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 GDAQ9Y2T3 454 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 ARFGEF2Q9Y6D5 1785 aa15.59■□□□□ 0.09
CCDC88A-211ENST00000471947 A0A1W2PQ27 194 aa15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 A0A1W2PQ64 194 aa15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 A0A1W2PQD8 194 aa15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 FMR1Q06787 632 aaKnown RBP eCLIP15.58■□□□□ 0.092e-8■□□□□ 10.2
CCDC88A-211ENST00000471947 COL23A1Q86Y22 540 aaPredicted RBP15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 CERKQ8TCT0 537 aa15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 RRP36Q96EU6 259 aaKnown RBP15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 PDGFDQ9GZP0 370 aaPredicted RBP15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 TDRD3Q9H7E2 651 aaKnown RBP15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 LEMD3Q9Y2U8 911 aa15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 TAF1P21675 1872 aa15.58■□□□□ 0.09
CCDC88A-211ENST00000471947 AOC3Q16853 763 aa15.58■□□□□ 0.08
CCDC88A-211ENST00000471947 BMP2KQ9NSY1 1161 aaPredicted RBP15.58■□□□□ 0.08
CCDC88A-211ENST00000471947 TRIM47Q96LD4 638 aa15.58■□□□□ 0.08
CCDC88A-211ENST00000471947 BRIP1Q9BX63 1249 aa15.58■□□□□ 0.08
CCDC88A-211ENST00000471947 ZBTB12Q9Y330 459 aaPredicted RBP15.58■□□□□ 0.08
CCDC88A-211ENST00000471947 CALM1P0DP23 149 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 CALM2P0DP24 149 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 CALM3P0DP25 149 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 PTPAQ15257 358 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 SEC23AQ15436 765 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 C12orf60Q5U649 245 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 DEFB132Q7Z7B7 95 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 IL17RBQ9NRM6 502 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 RBM28Q9NW13 759 aaKnown RBP15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 COL18A1P39060 1754 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 ATP2B4P23634 1241 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 ATL3Q6DD88 541 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 ZNF287Q9HBT7 754 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 TRIM49BA6NDI0 452 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 PPIP5K2O43314 1243 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 HLA-DOAP06340 250 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 CUL4BQ13620 913 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 TBC1D10BQ4KMP7 808 aaPredicted RBP15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 TYW1BQ6NUM6 668 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 MNS1Q8NEH6 495 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 TCP11L1Q9NUJ3 509 aa15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.57■□□□□ 0.08
CCDC88A-211ENST00000471947 TM4SF1P30408 202 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 ZNF76P36508 570 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 GNG11P61952 73 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 PKN1Q16512 942 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 ZFPM1Q8IX07 1006 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 ATF5Q9Y2D1 282 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 ROBO1Q9Y6N7 1651 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 FILIP1LQ4L180 1135 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 WWC2Q6AWC2 1192 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 FAM205AQ6ZU69 1335 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 CNTNAP4Q9C0A0 1308 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 A0A087X0B3 334 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 H0YIN7 160 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms