RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 FOSL2P15408 326 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 CAPN2P17655 700 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 ITGB8P26012 769 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 PLA2G5P39877 138 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 EPHB4P54760 987 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 PPP4CP60510 307 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 DDX10Q13206 875 aaKnown RBP6.65□□□□□ -1.34
PTPN4-209ENST00000469511 GRIN2CQ14957 1233 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 CCDC184Q52MB2 194 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 CAVIN4Q5BKX8 364 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 MORN1Q5T089 497 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 USP6NLQ92738 828 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 P2RX7Q99572 595 aaKnown RBP6.65□□□□□ -1.34
PTPN4-209ENST00000469511 PORCNQ9H237 461 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 BICC1Q9H694 974 aaKnown RBP6.65□□□□□ -1.34
PTPN4-209ENST00000469511 PICK1Q9NRD5 415 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 ZNFX1Q9P2E3 1918 aaKnown RBP6.65□□□□□ -1.34
PTPN4-209ENST00000469511 BDP1A6H8Y1 2624 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 RFX7Q2KHR2 1363 aa6.65□□□□□ -1.35
PTPN4-209ENST00000469511 MUC3AQ02505 3323 aa6.65□□□□□ -1.35
PTPN4-209ENST00000469511 DNAH12Q6ZR08 3092 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 CTNND1O60716 968 aaKnown RBP6.64□□□□□ -1.35
PTPN4-209ENST00000469511 RTP1P59025 263 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 PICALMQ13492 652 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 TRPV1Q8NER1 839 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 ZNF384Q8TF68 577 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 PPM1EQ8WY54 764 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 BADQ92934 168 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 NECAB3Q96P71 396 aaPredicted RBP6.64□□□□□ -1.35
PTPN4-209ENST00000469511 SNRKQ9NRH2 765 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 C9orf78Q9NZ63 289 aaPredicted RBP6.64□□□□□ -1.35
PTPN4-209ENST00000469511 RBPJLQ9UBG7 517 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 LRRFIP2Q9Y608 721 aaKnown RBP6.64□□□□□ -1.35
PTPN4-209ENST00000469511 MROH5Q6ZUA9 1318 aa6.64□□□□□ -1.35
PTPN4-209ENST00000469511 TRIM43BA6NCK2 446 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 MAST3O60307 1309 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 RFX5P48382 616 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 CALD1Q05682 793 aaKnown RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 EXOSC9Q06265 439 aaKnown RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 TJAP1Q5JTD0 557 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 GJC2Q5T442 439 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 ANO1Q5XXA6 986 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 SLC4A10Q6U841 1118 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 ZSCAN29Q8IWY8 852 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 WWC1Q8IX03 1113 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 TRIM43Q96BQ3 446 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 LBHD1Q9BQE6 289 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 IDI2Q9BXS1 227 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 MORF4L1Q9UBU8 362 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 ATP11BQ9Y2G3 1177 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 SUGT1Q9Y2Z0 365 aa6.63□□□□□ -1.35
PTPN4-209ENST00000469511 SALL2Q9Y467 1007 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-209ENST00000469511 FANCIQ9NVI1 1328 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 APBB1O00213 710 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 ENTPD3O75355 529 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 AP1G2O75843 785 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 LDHBP07195 334 aaKnown RBP6.62□□□□□ -1.35
PTPN4-209ENST00000469511 ZKSCAN1P17029 563 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-209ENST00000469511 ADORA1P30542 326 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 PHKA1P46020 1223 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 GCLCP48506 637 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-209ENST00000469511 RHBDL3P58872 404 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 MAP3K12Q12852 859 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 RABL6Q3YEC7 729 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-209ENST00000469511 ATG9AQ7Z3C6 839 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 GPR142Q7Z601 462 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 ZNF280CQ8ND82 737 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 NPLOC4Q8TAT6 608 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 WDR66Q8TBY9 1149 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 SYMPKQ92797 1274 aaKnown RBP6.62□□□□□ -1.35
PTPN4-209ENST00000469511 CLUAP1Q96AJ1 413 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 FAM122AQ96E09 287 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 NUDT12Q9BQG2 462 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 PRDM5Q9NQX1 630 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-209ENST00000469511 SLC27A5Q9Y2P5 690 aa6.62□□□□□ -1.35
PTPN4-209ENST00000469511 GAKO14976 1311 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 GRXCR1A8MXD5 290 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 CFAP99D6REC4 459 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 RAD21O60216 631 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 CNMDO75829 334 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 IFIT1P09914 478 aaKnown RBP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 XRCC5P13010 732 aaKnown RBP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 CYP2C19P33261 490 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 ZEB1P37275 1124 aaPredicted RBP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 CAP2P40123 477 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 BTDP43251 543 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 HERVK_113P62684 666 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 SMAD3P84022 425 aaKnown RBP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 PDE3AQ14432 1141 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 PUS10Q3MIT2 529 aaKnown RBP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 TRIM60Q495X7 471 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 SLC39A5Q6ZMH5 540 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 THSD4Q6ZMP0 1018 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 FERMT2Q96AC1 680 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 PAGR1Q9BTK6 254 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 PDLIM7Q9NR12 457 aa6.61□□□□□ -1.35
PTPN4-209ENST00000469511 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.61□□□□□ -1.35
PTPN4-209ENST00000469511 MUC6Q6W4X9 2439 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 UTYO14607 1347 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms