RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 PRKG1Q13976 671 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CYB5R4Q7L1T6 521 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 ZSCAN10Q96SZ4 725 aaPredicted RBP8.69□□□□□ -1.02
USP54-210ENST00000466048 ZSWIM5Q9P217 1185 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 GOLGA6L9A6NEM1 432 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CLGNO14967 610 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 TNNT1P13805 278 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 ME1P48163 572 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 GSDMDP57764 484 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 JAKMIP3Q5VZ66 844 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 LRRC4BQ9NT99 713 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 RTEL1Q9NZ71 1219 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 SMTNL1A8MU46 457 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 PRKAB2O43741 272 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CTDNEP1O95476 244 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CHMP4BP1P59074 171 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 TUBB4BP68371 445 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 FAM193AP78312 1265 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CNKSR2Q8WXI2 1034 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CCDC102AQ96A19 550 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 CRACR2AQ9BSW2 395 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 LUC7LQ9NQ29 371 aaKnown RBP8.69□□□□□ -1.02
USP54-210ENST00000466048 ZNRF3Q9ULT6 936 aa8.69□□□□□ -1.02
USP54-210ENST00000466048 GTF2F1P35269 517 aaKnown RBP eCLIP8.68□□□□□ -1.02
USP54-210ENST00000466048 DOK7Q18PE1 504 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 PDILTQ8N807 584 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 CHURC1Q8WUH1 139 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 PCMTD1Q96MG8 357 aaPredicted RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 SLC26A6Q9BXS9 759 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 CLSTN2Q9H4D0 955 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 TFIP11Q9UBB9 837 aaKnown RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 A0A1W2PQ27 194 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 A0A1W2PQ64 194 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 A0A1W2PQD8 194 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 ZBED4O75132 1171 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 KRT18P05783 430 aaKnown RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 USP14P54578 494 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 PPP4CP60510 307 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 CCDC91Q7Z6B0 441 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 ZNF654Q8IZM8 581 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 C2orf69Q8N8R5 385 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 POLR3EQ9NVU0 708 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 BIN2Q9UBW5 565 aaPredicted RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 HPS5Q9UPZ3 1129 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 V9GYY5 206 aaPredicted RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 A0A1B0GUL6 1792 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 MYH13Q9UKX3 1938 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 GPSM2P81274 684 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 PNMA8AQ86V59 439 aaPredicted RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 GPATCH11Q8N954 259 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 PPP1R9BQ96SB3 815 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 AATFQ9NY61 560 aaKnown RBP eCLIP8.68□□□□□ -1.02
USP54-210ENST00000466048 UBR3Q6ZT12 1888 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 POLRMTO00411 1230 aaKnown RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 IL1R1P14778 569 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 NLRP5P59047 1200 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 LUZP1Q86V48 1076 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 KIAA0825Q8IV33 1275 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 RNF26Q9BY78 433 aaPredicted RBP8.68□□□□□ -1.02
USP54-210ENST00000466048 NBPF3Q9H094 633 aa8.68□□□□□ -1.02
USP54-210ENST00000466048 NEFHP12036 1026 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 POTEAQ6S8J7 498 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 GAS2L3Q86XJ1 694 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 COL23A1Q86Y22 540 aaPredicted RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 DHX37Q8IY37 1157 aaKnown RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 FAM177A1Q8N128 213 aaPredicted RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 FANCBQ8NB91 859 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 SDR42E1Q8WUS8 393 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 MRPS27Q92552 414 aaKnown RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 RRP36Q96EU6 259 aaKnown RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP54-210ENST00000466048 CD209Q9NNX6 404 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 TNKSO95271 1327 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 A0A0G2JLW4 131 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 GOLGA6L10A0A0M3HER8 536 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 KLRG2A4D1S0 409 aaPredicted RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 FGRP09769 529 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 GNA11P29992 359 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 CCNA1P78396 465 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 CCDC88AQ3V6T2 1871 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 FOXP4Q8IVH2 680 aaPredicted RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 RASSF4Q9H2L5 321 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 MROH7-TTC4A0A0A0MT08 1334 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 USP17L12C9JPN9 530 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 USP17L21D6R901 530 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 ECM2O94769 699 aaPredicted RBP8.67□□□□□ -1.02
USP54-210ENST00000466048 LMNB1P20700 586 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 SFPQP23246 707 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP54-210ENST00000466048 FAM160A1Q05DH4 1040 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 MYSM1Q5VVJ2 828 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 LRRC27Q9C0I9 530 aa8.67□□□□□ -1.02
USP54-210ENST00000466048 SPTLC2O15270 562 aa8.66□□□□□ -1.02
USP54-210ENST00000466048 DYNLL1P63167 89 aaKnown RBP8.66□□□□□ -1.02
USP54-210ENST00000466048 STIM1Q13586 685 aa8.66□□□□□ -1.02
USP54-210ENST00000466048 KRT40Q6A162 431 aa8.66□□□□□ -1.02
USP54-210ENST00000466048 KIAA1328Q86T90 577 aa8.66□□□□□ -1.02
USP54-210ENST00000466048 SRRTQ9BXP5 876 aaKnown RBP8.66□□□□□ -1.02
USP54-210ENST00000466048 RBSNQ9H1K0 784 aa8.66□□□□□ -1.02
USP54-210ENST00000466048 C6orf50Q9HD87 102 aa8.66□□□□□ -1.02
USP54-210ENST00000466048 DCP1AQ9NPI6 582 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms