RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	TMEM179	Q6ZVK1	233 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	FBXO33	Q7Z6M2	555 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	PDCL2	Q8N4E4	241 aa		13.25	□□□□□ -0.29
RBM39-223	ENST00000463004	XRCC6	P12956	609 aa	Known RBP eCLIP	13.24	□□□□□ -0.29	3e-9	■■□□□ 12.4
RBM39-223	ENST00000463004	ZFYVE27	Q5T4F4	411 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	SYNE4	Q8N205	404 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	PSTPIP2	Q9H939	334 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	RCOR1	Q9UKL0	485 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	NALCN	Q8IZF0	1738 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	MYL1	P05976	194 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	NLRX1	Q86UT6	975 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	TUBB4B	P68371	445 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	TMEM87A	Q8NBN3	555 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	DCPS	Q96C86	337 aa	Known RBP	13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	KCNJ14	Q9UNX9	436 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	CAMTA1	Q9Y6Y1	1673 aa		13.24	□□□□□ -0.29
RBM39-223	ENST00000463004	SULF1	Q8IWU6	871 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	ALS2CR12	Q96Q35	445 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	CSRNP1	Q96S65	589 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	PCDHA4	Q9UN74	947 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	USP28	Q96RU2	1077 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	DBNDD1	Q9H9R9	158 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	PRKAB2	O43741	272 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	CDK8	P49336	464 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	POSTN	Q15063	836 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	RCSD1	Q6JBY9	416 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	DCAF4	Q8WV16	495 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	TBC1D5	Q92609	795 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	OR52Z1	P0C646	297 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	USP17L8	P0C7I0	530 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	POLR2M	P0CAP2	368 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	GPSM2	P81274	684 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	PLS1	Q14651	629 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	TCERG1L	Q5VWI1	586 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	OTUD7B	Q6GQQ9	843 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	PPP1R18	Q6NYC8	613 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	IMPACT	Q9P2X3	320 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	EXOC7	Q9UPT5	735 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	DNM3	Q9UQ16	869 aa		13.23	□□□□□ -0.29
RBM39-223	ENST00000463004	TOPAZ1	Q8N9V7	1692 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	POLR2D	O15514	142 aa	Known RBP	13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	CRK	P46108	304 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	HDLBP	Q00341	1268 aa	Known RBP	13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	STRIP1	Q5VSL9	837 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	CABP7	Q86V35	215 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	IWS1	Q96ST2	819 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	PAXBP1	Q9Y5B6	917 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	GNPTAB	Q3T906	1256 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	ARHGAP27	Q6ZUM4	889 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	CNGA4	Q8IV77	575 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	POTEB2	H3BUK9	544 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	MMP1	P03956	469 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	CLEC17A	Q6ZS10	378 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	TBC1D16	Q8TBP0	767 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	SNX29	Q8TEQ0	813 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	GSG1L2	A8MUP6	293 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	CASP7	P55210	303 aa		13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	KIF23	Q02241	960 aa	Predicted RBP	13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	NCBP1	Q09161	790 aa	Known RBP	13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	BRDT	Q58F21	947 aa	Predicted RBP	13.22	□□□□□ -0.29
RBM39-223	ENST00000463004	FDX1	P10109	184 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	SMTN	P53814	917 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	KRT83	P78385	493 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	TDRD12	Q587J7	1177 aa	Known RBP	13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	SLC5A4	Q9NY91	659 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	TCP10L2	B9ZVM9	353 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	TXK	P42681	527 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	IRX3	P78415	501 aa	Predicted RBP	13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	NUP58	Q9BVL2	599 aa		13.21	□□□□□ -0.29
RBM39-223	ENST00000463004	ASNS	P08243	561 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	HHIPL2	Q6UWX4	724 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	FCHSD1	Q86WN1	690 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	NSUN4	Q96CB9	384 aa	Known RBP	13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	KAZALD1	Q96I82	304 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	PRIMPOL	Q96LW4	560 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	SPAG5	Q96R06	1193 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	KIAA1468	Q9P260	1216 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	HERC5	Q9UII4	1024 aa	Known RBP	13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	ZKSCAN5	Q9Y2L8	839 aa		13.21	□□□□□ -0.3
RBM39-223	ENST00000463004	BTBD18	B2RXH4	712 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	ECE2	O60344	883 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	PRDX5	P30044	214 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	CASQ1	P31415	396 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	BICD1	Q96G01	975 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	SEPT11	Q9NVA2	429 aa	Known RBP	13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	IVNS1ABP	Q9Y6Y0	642 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	FAM208A	Q9UK61	1670 aa	Known RBP	13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	BMP3	P12645	472 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	PDE4D	Q08499	809 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	TOB2	Q14106	344 aa	Predicted RBP	13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	TMTC3	Q6ZXV5	915 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	UBXN4	Q92575	508 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	CALU	O43852	315 aa	Predicted RBP	13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	PAFAH1B1	P43034	410 aa		13.2	□□□□□ -0.3
RBM39-223	ENST00000463004	SEMA3F	Q13275	785 aa		13.2	□□□□□ -0.3

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