RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 HOXC6P09630 235 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 KIAA1755Q5JYT7 1200 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 TMEM179Q6ZVK1 233 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 LRCH3Q96II8 777 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 HAUS7Q99871 368 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 TANGO6Q9C0B7 1094 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 SWAP70Q9UH65 585 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 IVNS1ABPQ9Y6Y0 642 aa19.45■□□□□ 0.7
COL7A1-204ENST00000462475 CYP2D7A0A087X1C5 515 aa19.44■□□□□ 0.7
COL7A1-204ENST00000462475 AKR1B1P15121 316 aa19.44■□□□□ 0.7
COL7A1-204ENST00000462475 ATP5JP18859 108 aa19.44■□□□□ 0.7
COL7A1-204ENST00000462475 MFSD14CQ5VZR4 134 aa19.44■□□□□ 0.7
COL7A1-204ENST00000462475 NPLOC4Q8TAT6 608 aa19.44■□□□□ 0.7
COL7A1-204ENST00000462475 MOV10L1Q9BXT6 1211 aaKnown RBP19.44■□□□□ 0.7
COL7A1-204ENST00000462475 BMP8BP34820 402 aa19.43■□□□□ 0.7
COL7A1-204ENST00000462475 MAGEA10P43363 369 aaPredicted RBP19.43■□□□□ 0.7
COL7A1-204ENST00000462475 SIAH1Q8IUQ4 282 aa19.43■□□□□ 0.7
COL7A1-204ENST00000462475 ATP8A2Q9NTI2 1148 aa19.43■□□□□ 0.7
COL7A1-204ENST00000462475 RCAN3Q9UKA8 241 aa19.43■□□□□ 0.7
COL7A1-204ENST00000462475 A0A0G2JMZ2 1700 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 CYP2C19P33261 490 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 ATP2B2Q01814 1243 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 ICA1Q05084 483 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 COG2Q14746 738 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 LRRC26Q2I0M4 334 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 C20orf194Q5TEA3 1177 aa19.42■□□□□ 0.7
COL7A1-204ENST00000462475 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.42■□□□□ 0.7
COL7A1-204ENST00000462475 C12orf60Q5U649 245 aa19.41■□□□□ 0.7
COL7A1-204ENST00000462475 SPICE1Q8N0Z3 855 aa19.41■□□□□ 0.7
COL7A1-204ENST00000462475 TRPV1Q8NER1 839 aa19.41■□□□□ 0.7
COL7A1-204ENST00000462475 SPATC1LQ9H0A9 340 aa19.41■□□□□ 0.7
COL7A1-204ENST00000462475 HOXC10Q9NYD6 342 aa19.41■□□□□ 0.7
COL7A1-204ENST00000462475 DDX20Q9UHI6 824 aaKnown RBP19.41■□□□□ 0.7
COL7A1-204ENST00000462475 TMX2Q9Y320 296 aa19.41■□□□□ 0.7
COL7A1-204ENST00000462475 DNAH12Q6ZR08 3092 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 FRMPD3Q5JV73 1810 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 ZNF236Q9UL36 1845 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 USP17L12C9JPN9 530 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 USP17L21D6R901 530 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 SMARCA5O60264 1052 aaPredicted RBP19.4■□□□□ 0.7
COL7A1-204ENST00000462475 IGHA2P01877 340 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 ERCC3P19447 782 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 ADORA2AP29274 412 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 DSG3P32926 999 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 CDK8P49336 464 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 UBE3CQ15386 1083 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 LPAR1Q92633 364 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 CHMP4BQ9H444 224 aaKnown RBP19.4■□□□□ 0.7
COL7A1-204ENST00000462475 ARHGEF10LQ9HCE6 1279 aa19.4■□□□□ 0.7
COL7A1-204ENST00000462475 RLFQ13129 1914 aa19.39■□□□□ 0.7
COL7A1-204ENST00000462475 FLOT1O75955 427 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 CYBAP13498 195 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 CNGA1P29973 690 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 C16orf86Q6ZW13 317 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 SHCBP1Q8NEM2 672 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 ATG4CQ96DT6 458 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 LRRCC1Q9C099 1032 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 PUS7LQ9H0K6 701 aaKnown RBP19.39■□□□□ 0.69
COL7A1-204ENST00000462475 VCPKMTQ9H867 229 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 SLC4A4Q9Y6R1 1079 aa19.39■□□□□ 0.69
COL7A1-204ENST00000462475 COL6A3P12111 3177 aa19.38■□□□□ 0.69
COL7A1-204ENST00000462475 PLS1Q14651 629 aa19.38■□□□□ 0.69
COL7A1-204ENST00000462475 SAMD1Q6SPF0 538 aaPredicted RBP19.38■□□□□ 0.69
COL7A1-204ENST00000462475 DPP9Q86TI2 863 aa19.38■□□□□ 0.69
COL7A1-204ENST00000462475 MB21D1Q8N884 522 aa19.38■□□□□ 0.69
COL7A1-204ENST00000462475 CCDC17Q96LX7 622 aa19.38■□□□□ 0.69
COL7A1-204ENST00000462475 SH2D4AQ9H788 454 aa19.38■□□□□ 0.69
COL7A1-204ENST00000462475 BAZ2AQ9UIF9 1905 aaKnown RBP19.38■□□□□ 0.69
COL7A1-204ENST00000462475 MSCO60682 206 aa19.37■□□□□ 0.69
COL7A1-204ENST00000462475 COBLO75128 1261 aa19.37■□□□□ 0.69
COL7A1-204ENST00000462475 OLFML2BQ68BL8 750 aa19.37■□□□□ 0.69
COL7A1-204ENST00000462475 AMOTL1Q8IY63 956 aa19.37■□□□□ 0.69
COL7A1-204ENST00000462475 SENP6Q9GZR1 1112 aaPredicted RBP19.37■□□□□ 0.69
COL7A1-204ENST00000462475 WDR46O15213 610 aaKnown RBP19.36■□□□□ 0.69
COL7A1-204ENST00000462475 STRNO43815 780 aa19.36■□□□□ 0.69
COL7A1-204ENST00000462475 EEF2P13639 858 aaKnown RBP19.36■□□□□ 0.69
COL7A1-204ENST00000462475 CTR9Q6PD62 1173 aa19.36■□□□□ 0.69
COL7A1-204ENST00000462475 NCAPG2Q86XI2 1143 aa19.36■□□□□ 0.69
COL7A1-204ENST00000462475 TDHQ8IZJ6 230 aa19.36■□□□□ 0.69
COL7A1-204ENST00000462475 DDRGK1Q96HY6 314 aa19.36■□□□□ 0.69
COL7A1-204ENST00000462475 UBE2OQ9C0C9 1292 aaKnown RBP19.36■□□□□ 0.69
COL7A1-204ENST00000462475 MYH8P13535 1937 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 DNM1LO00429 736 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 ATN1P54259 1190 aaPredicted RBP19.35■□□□□ 0.69
COL7A1-204ENST00000462475 TMEM132BQ14DG7 1078 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 LRIT3Q3SXY7 679 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 ANO1Q5XXA6 986 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 ZSCAN25Q6NSZ9 544 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 MROH8Q9H579 483 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 FBXO28Q9NVF7 368 aa19.35■□□□□ 0.69
COL7A1-204ENST00000462475 MDM2Q00987 491 aaPredicted RBP19.34■□□□□ 0.69
COL7A1-204ENST00000462475 TSHZ3Q63HK5 1081 aa19.34■□□□□ 0.69
COL7A1-204ENST00000462475 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.34■□□□□ 0.69
COL7A1-204ENST00000462475 KANSL2Q9H9L4 492 aa19.34■□□□□ 0.69
COL7A1-204ENST00000462475 ECHDC1Q9NTX5 307 aa19.34■□□□□ 0.69
COL7A1-204ENST00000462475 ARPP21Q9UBL0 812 aaPredicted RBP19.34■□□□□ 0.69
COL7A1-204ENST00000462475 MYH7P12883 1935 aa19.33■□□□□ 0.69
COL7A1-204ENST00000462475 GJC2Q5T442 439 aaPredicted RBP19.33■□□□□ 0.68
COL7A1-204ENST00000462475 ABRAQ8N0Z2 381 aa19.33■□□□□ 0.68
COL7A1-204ENST00000462475 STRBPQ96SI9 672 aaKnown RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 1417.5 ms