RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 CASC1Q6TDU7 716 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 LBX2Q6XYB7 198 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 TNS4Q8IZW8 715 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.05□□□□□ -0.16
VPS52-213ENST00000461743 MYPNQ86TC9 1320 aa14.05□□□□□ -0.16
VPS52-213ENST00000461743 ZNFX1Q9P2E3 1918 aaKnown RBP14.04□□□□□ -0.16
VPS52-213ENST00000461743 TSPY2A6NKD2 308 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 ZNF213O14771 459 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 EEF2P13639 858 aaKnown RBP14.04□□□□□ -0.16
VPS52-213ENST00000461743 PRMT2P55345 433 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 HERVK_113P62684 666 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 DGKZQ13574 1117 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 ZYXQ15942 572 aaKnown RBP14.04□□□□□ -0.16
VPS52-213ENST00000461743 MFSD6Q6ZSS7 791 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 CLEC10AQ8IUN9 316 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 CD99L2Q8TCZ2 262 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 MKL1Q969V6 931 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 IL25Q9H293 177 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 MTMR4Q9NYA4 1195 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 MORF4L1Q9UBU8 362 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 CPA4Q9UI42 421 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 PLXNA1Q9UIW2 1896 aa14.04□□□□□ -0.16
VPS52-213ENST00000461743 CDC45O75419 566 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 TFAP4Q01664 338 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 FBXO46Q6PJ61 603 aaPredicted RBP14.03□□□□□ -0.16
VPS52-213ENST00000461743 CATSPERGQ6ZRH7 1159 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 OTOP1Q7RTM1 612 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 SIAH1Q8IUQ4 282 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 STK11IPQ8N1F8 1099 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 GMCL1P1Q8NEA9 526 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 CEP95Q96GE4 821 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 MCOLN1Q9GZU1 580 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 NBPF3Q9H094 633 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 RPAP3Q9H6T3 665 aaPredicted RBP14.03□□□□□ -0.16
VPS52-213ENST00000461743 CNNM2Q9H8M5 875 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 EFCC1Q9HA90 598 aa14.03□□□□□ -0.16
VPS52-213ENST00000461743 U3KPZ7 1027 aaPredicted RBP14.03□□□□□ -0.16
VPS52-213ENST00000461743 CENPFP49454 3210 aa14.02□□□□□ -0.16
VPS52-213ENST00000461743 RANBP6O60518 1105 aaKnown RBP14.02□□□□□ -0.17
VPS52-213ENST00000461743 NOVP48745 357 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 HAND2P61296 217 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 ATP2B2Q01814 1243 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 TBC1D10CQ8IV04 446 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 ESR2Q92731 530 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 ESYT1Q9BSJ8 1104 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 TCP11L1Q9NUJ3 509 aa14.02□□□□□ -0.17
VPS52-213ENST00000461743 NEDD4P46934 1319 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 FCGRTP55899 365 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 CCDC178Q5BJE1 867 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 FAM47AQ5JRC9 791 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 KIAA1211Q6ZU35 1233 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 ANKRD13CQ8N6S4 541 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 MB21D1Q8N884 522 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 KRT23Q9C075 422 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 TANGO6Q9C0B7 1094 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 TOMM22Q9NS69 142 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 RABGAP1Q9Y3P9 1069 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 TRIM17Q9Y577 477 aa14.01□□□□□ -0.17
VPS52-213ENST00000461743 SPDYE16A6NNV3 312 aaPredicted RBP14□□□□□ -0.17
VPS52-213ENST00000461743 HOXD10P28358 340 aa14□□□□□ -0.17
VPS52-213ENST00000461743 COG2Q14746 738 aa14□□□□□ -0.17
VPS52-213ENST00000461743 MAP4K1Q92918 833 aa14□□□□□ -0.17
VPS52-213ENST00000461743 P2RX7Q99572 595 aaKnown RBP14□□□□□ -0.17
VPS52-213ENST00000461743 HOXC10Q9NYD6 342 aa14□□□□□ -0.17
VPS52-213ENST00000461743 TACC3Q9Y6A5 838 aa14□□□□□ -0.17
VPS52-213ENST00000461743 NDUFB10O96000 172 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 PSMC4P43686 418 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 ERVK-9P63128 1117 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 ERVK-24P63145 666 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 CCNA1P78396 465 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 RRP12Q5JTH9 1297 aaKnown RBP13.99□□□□□ -0.17
VPS52-213ENST00000461743 KIAA1755Q5JYT7 1200 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 SKAP1Q86WV1 359 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 IQCA1Q86XH1 822 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 GPRC5AQ8NFJ5 357 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 GMCL1Q96IK5 515 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 TRIM47Q96LD4 638 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 LSG1Q9H089 658 aaKnown RBP13.99□□□□□ -0.17
VPS52-213ENST00000461743 IL17RBQ9NRM6 502 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 CLIP2Q9UDT6 1046 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 STX8Q9UNK0 236 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 PTPN22Q9Y2R2 807 aa13.99□□□□□ -0.17
VPS52-213ENST00000461743 F5H6K3 240 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 FLOT1O75955 427 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 MAPK4P31152 587 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 DSG3P32926 999 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 PTH1RQ03431 593 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 KLRC3Q07444 240 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 TRDNQ13061 729 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 SPICE1Q8N0Z3 855 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 ABHD8Q96I13 439 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 TTC14Q96N46 770 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 SRRDQ9UH36 339 aa13.98□□□□□ -0.17
VPS52-213ENST00000461743 FRMPD3Q5JV73 1810 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 TNPO2O14787 897 aaKnown RBP13.97□□□□□ -0.17
VPS52-213ENST00000461743 PLA2G6O60733 806 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 FMNL1O95466 1100 aaPredicted RBP13.97□□□□□ -0.17
VPS52-213ENST00000461743 CYP21A2P08686 494 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 FDX1P10109 184 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 TOP1P11387 765 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms