RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 IFNL3Q8IZI9 196 aa18.35■□□□□ 0.53
VARS-219ENST00000461328 NKX2-3Q8TAU0 364 aa18.35■□□□□ 0.53
VARS-219ENST00000461328 SOCS4Q8WXH5 440 aa18.35■□□□□ 0.53
VARS-219ENST00000461328 TANGO6Q9C0B7 1094 aa18.35■□□□□ 0.53
VARS-219ENST00000461328 ROBO3Q96MS0 1386 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 GJB1P08034 283 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 CCNA1P78396 465 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 POTEEQ6S8J3 1075 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 SIAH1Q8IUQ4 282 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 LPAR1Q92633 364 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 FAM227BQ96M60 508 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 UNC93B1Q9H1C4 597 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 PORCNQ9H237 461 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 OSBPL3Q9H4L5 887 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 KANSL2Q9H9L4 492 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 ZNF287Q9HBT7 754 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 HELLSQ9NRZ9 838 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 GJD2Q9UKL4 321 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 TMX2Q9Y320 296 aa18.34■□□□□ 0.53
VARS-219ENST00000461328 A0A0D9SFI3 127 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 SPDYE16A6NNV3 312 aaPredicted RBP18.33■□□□□ 0.52
VARS-219ENST00000461328 SLC3A2P08195 630 aaKnown RBP18.33■□□□□ 0.52
VARS-219ENST00000461328 EEF2P13639 858 aaKnown RBP18.33■□□□□ 0.52
VARS-219ENST00000461328 GJA8P48165 433 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 NMIQ13287 307 aaPredicted RBP18.33■□□□□ 0.52
VARS-219ENST00000461328 PRPF38BQ5VTL8 546 aaKnown RBP18.33■□□□□ 0.52
VARS-219ENST00000461328 LBX2Q6XYB7 198 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 SPICE1Q8N0Z3 855 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 NUDT12Q9BQG2 462 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 VCPKMTQ9H867 229 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 PDE4DIPQ5VU43 2346 aa18.33■□□□□ 0.52
VARS-219ENST00000461328 DOCK3Q8IZD9 2030 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 CNMDO75829 334 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 HMGCRP04035 888 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 CYP2B6P20813 491 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 COG2Q14746 738 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 MCMDC2Q4G0Z9 681 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 KIAA1755Q5JYT7 1200 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 WDR78Q5VTH9 848 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 GPR142Q7Z601 462 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 PLEKHH3Q7Z736 793 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 TICAM2Q86XR7 235 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 SHISA4Q96DD7 197 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 DIAPH3Q9NSV4 1193 aa18.32■□□□□ 0.52
VARS-219ENST00000461328 PRDM1O75626 825 aa18.31■□□□□ 0.52
VARS-219ENST00000461328 RASA1P20936 1047 aa18.31■□□□□ 0.52
VARS-219ENST00000461328 U2AF1L4Q8WU68 220 aaKnown RBP18.31■□□□□ 0.52
VARS-219ENST00000461328 GOPCQ9HD26 462 aa18.31■□□□□ 0.52
VARS-219ENST00000461328 HOXC10Q9NYD6 342 aa18.31■□□□□ 0.52
VARS-219ENST00000461328 BTBD7Q9P203 1132 aa18.31■□□□□ 0.52
VARS-219ENST00000461328 WDR46O15213 610 aaKnown RBP18.3■□□□□ 0.52
VARS-219ENST00000461328 RAD21O60216 631 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 FLOT1O75955 427 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 SDSP20132 328 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 PDE4AP27815 886 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 RGS2P41220 211 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 PDE4BQ07343 736 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 PPARAQ07869 468 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 ZNF444Q8N0Y2 327 aaPredicted RBP18.3■□□□□ 0.52
VARS-219ENST00000461328 DEFB118Q96PH6 123 aa18.3■□□□□ 0.52
VARS-219ENST00000461328 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.3■□□□□ 0.52
VARS-219ENST00000461328 CCDC171Q6TFL3 1326 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 PLXNB2O15031 1838 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 HIP1O00291 1037 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 XRCC5P13010 732 aaKnown RBP18.29■□□□□ 0.52
VARS-219ENST00000461328 MFAP1P55081 439 aaKnown RBP18.29■□□□□ 0.52
VARS-219ENST00000461328 MORN1Q5T089 497 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 VPS53Q5VIR6 699 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 SAMD1Q6SPF0 538 aaPredicted RBP18.29■□□□□ 0.52
VARS-219ENST00000461328 TRIB2Q92519 343 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.29■□□□□ 0.523e-8■■■■■ 46.9
VARS-219ENST00000461328 IVNS1ABPQ9Y6Y0 642 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 BRCA2P51587 3418 aa18.29■□□□□ 0.52
VARS-219ENST00000461328 SGPL1O95470 568 aa18.28■□□□□ 0.52
VARS-219ENST00000461328 ZKSCAN1P17029 563 aaPredicted RBP18.28■□□□□ 0.52
VARS-219ENST00000461328 DSG3P32926 999 aa18.28■□□□□ 0.52
VARS-219ENST00000461328 CWC27Q6UX04 472 aaKnown RBP18.28■□□□□ 0.52
VARS-219ENST00000461328 ZNF589Q86UQ0 364 aaPredicted RBP18.28■□□□□ 0.52
VARS-219ENST00000461328 TRMT44Q8IYL2 757 aaKnown RBP18.28■□□□□ 0.52
VARS-219ENST00000461328 APBA2Q99767 749 aa18.28■□□□□ 0.52
VARS-219ENST00000461328 PAK6Q9NQU5 681 aaPredicted RBP18.28■□□□□ 0.52
VARS-219ENST00000461328 FOXP2O15409 715 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 TFRCP02786 760 aaKnown RBP18.27■□□□□ 0.52
VARS-219ENST00000461328 TSPY3P0CV98 308 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 TSPY8P0CW00 308 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 PTPREP23469 700 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 CTDSPL2Q05D32 466 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 TRIM32Q13049 653 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 MAP2K5Q13163 448 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 PLS1Q14651 629 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 TTC22Q5TAA0 569 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 MB21D1Q8N884 522 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 USP6NLQ92738 828 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 ATG4CQ96DT6 458 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 SPATC1LQ9H0A9 340 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 HMX1Q9NP08 348 aaPredicted RBP18.27■□□□□ 0.52
VARS-219ENST00000461328 NYAP2Q9P242 653 aa18.27■□□□□ 0.52
VARS-219ENST00000461328 RPTORQ8N122 1335 aa18.26■□□□□ 0.51
VARS-219ENST00000461328 MKI67P46013 3256 aaKnown RBP18.26■□□□□ 0.51
VARS-219ENST00000461328 GREB1LQ9C091 1923 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms